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Project measure / variable:   Seburn1   tot_dark

ID, description, units MPD:9225   tot_dark   total activity, beam breaks per min, 3 day test   [n/min]  dark  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - total activity, beam breaks per min, 3 day test dark



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means45.7   n/min 36.5   n/min
Median of the strain means40.8   n/min 35.0   n/min
SD of the strain means± 13.3 ± 10.3
Coefficient of variation (CV)0.292 0.282
Min–max range of strain means27.6   –   69.2   n/min 22.9   –   57.8   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4394.7042 4394.7042 46.8935 < 0.0001
strain 14 29707.9213 2121.9944 22.6427 < 0.0001
sex:strain 14 2128.9046 152.0646 1.6226 0.0751
Residuals 210 19680.5 93.7167


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 32.0 4.46   8 1.58 0.139 26.5, 39.9 -1.03
129S1/SvImJ m 28.5 4.04   8 1.43 0.142 23.7, 35.1 -0.78
A/J f 46.1 10.7   8 3.78 0.231 30.0, 64.9 0.03
A/J m 39.9 8.13   8 2.88 0.204 26.4, 51.5 0.33
AKR/J f 56.1 8.98   8 3.17 0.16 45.6, 70.0 0.78
AKR/J m 38.2 5.08   8 1.8 0.133 31.8, 45.8 0.16
BALB/cJ f 53.7 10.4   8 3.67 0.193 34.7, 71.8 0.6
BALB/cJ m 41.4 6.9   8 2.44 0.167 31.5, 49.5 0.47
BTBR T+ Itpr3tf/J f 47.3 11.2   8 3.94 0.236 31.4, 60.8 0.12
BTBR T+ Itpr3tf/J m 43.9 8.34   8 2.95 0.19 32.5, 57.6 0.71
C3H/HeJ f 38.0 5.8   8 2.05 0.153 30.6, 46.7 -0.58
C3H/HeJ m 30.7 4.04   8 1.43 0.132 23.5, 35.9 -0.57
C57BL/6J f 68.0 11.3   8 4.01 0.167 45.2, 83.4 1.67
C57BL/6J m 50.5 6.7   8 2.37 0.133 41.9, 62.9 1.36
CAST/EiJ f 69.2 22.2   8 7.85 0.321 51.8, 121.0 1.76
CAST/EiJ m 48.5 14.9   8 5.28 0.308 24.8, 70.9 1.16
CBA/J f 39.9 6.61   8 2.34 0.165 31.7, 53.4 -0.44
CBA/J m 30.1 6.82   8 2.41 0.227 24.0, 43.6 -0.62
FVB/NJ f 40.8 8.62   8 3.05 0.211 24.3, 49.5 -0.37
FVB/NJ m 42.2 23.9   8 8.45 0.565 26.5, 100.0 0.55
LP/J f 31.4 9.67   8 3.42 0.308 18.9, 46.8 -1.08
LP/J m 25.9 8.06   8 2.85 0.311 17.4, 41.4 -1.03
NOD/ShiLtJ f 62.1 8.08   8 2.86 0.13 53.7, 77.6 1.23
NOD/ShiLtJ m 57.8 5.95   8 2.1 0.103 49.7, 68.7 2.06
NZB/BlNJ f 27.6 4.22   8 1.49 0.153 21.2, 34.9 -1.36
NZB/BlNJ m 22.9 5.12   8 1.81 0.224 18.4, 31.2 -1.32
PL/J f 39.1 8.48   8 3.0 0.217 24.2, 48.4 -0.5
PL/J m 31.8 4.19   8 1.48 0.132 27.7, 38.7 -0.46
SJL/J m 26.7 3.2   8 1.13 0.12 22.1, 30.8 -0.95
SWR/J f 34.9 6.44   8 2.28 0.184 27.5, 45.6 -0.81
SWR/J m 25.6 5.59   8 1.98 0.219 17.5, 35.5 -1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 32.0125 3.4227 38.7597 25.2653
129S1/SvImJ m 28.5 3.4227 35.2472 21.7528
A/J f 46.1375 3.4227 52.8847 39.3903
A/J m 39.85 3.4227 46.5972 33.1028
AKR/J f 56.0625 3.4227 62.8097 49.3153
AKR/J m 38.25 3.4227 44.9972 31.5028
BALB/cJ f 53.7 3.4227 60.4472 46.9528
BALB/cJ m 41.3625 3.4227 48.1097 34.6153
BTBR T+ Itpr3tf/J f 47.2625 3.4227 54.0097 40.5153
BTBR T+ Itpr3tf/J m 43.95 3.4227 50.6972 37.2028
C3H/HeJ f 37.975 3.4227 44.7222 31.2278
C3H/HeJ m 30.6625 3.4227 37.4097 23.9153
C57BL/6J f 68.0125 3.4227 74.7597 61.2653
C57BL/6J m 50.5 3.4227 57.2472 43.7528
CAST/EiJ f 69.175 3.4227 75.9222 62.4278
CAST/EiJ m 48.525 3.4227 55.2722 41.7778
CBA/J f 39.95 3.4227 46.6972 33.2028
CBA/J m 30.1125 3.4227 36.8597 23.3653
FVB/NJ f 40.7875 3.4227 47.5347 34.0403
FVB/NJ m 42.25 3.4227 48.9972 35.5028
LP/J f 31.425 3.4227 38.1722 24.6778
LP/J m 25.925 3.4227 32.6722 19.1778
NOD/ShiLtJ f 62.1375 3.4227 68.8847 55.3903
NOD/ShiLtJ m 57.8125 3.4227 64.5597 51.0653
NZB/BlNJ f 27.6 3.4227 34.3472 20.8528
NZB/BlNJ m 22.875 3.4227 29.6222 16.1278
PL/J f 39.125 3.4227 45.8722 32.3778
PL/J m 31.8 3.4227 38.5472 25.0528
SWR/J f 34.95 3.4227 41.6972 28.2028
SWR/J m 25.5625 3.4227 32.3097 18.8153


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.2562 2.4202 35.0272 25.4853
A/J both 42.9938 2.4202 47.7647 38.2228
AKR/J both 47.1563 2.4202 51.9272 42.3853
BALB/cJ both 47.5313 2.4202 52.3022 42.7603
BTBR T+ Itpr3tf/J both 45.6063 2.4202 50.3772 40.8353
C3H/HeJ both 34.3188 2.4202 39.0897 29.5478
C57BL/6J both 59.2563 2.4202 64.0272 54.4853
CAST/EiJ both 58.85 2.4202 63.621 54.079
CBA/J both 35.0313 2.4202 39.8022 30.2603
FVB/NJ both 41.5188 2.4202 46.2897 36.7478
LP/J both 28.675 2.4202 33.446 23.904
NOD/ShiLtJ both 59.975 2.4202 64.746 55.204
NZB/BlNJ both 25.2375 2.4202 30.0085 20.4665
PL/J both 35.4625 2.4202 40.2335 30.6915
SWR/J both 30.2563 2.4202 35.0272 25.4853




  GWAS USING LINEAR MIXED MODELS