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Project measure / variable:   Seburn1   tot_light

ID, description, units MPD:9224   tot_light   total activity, beam breaks per min, 3 day test   [n/min]  light  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
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  STRAIN COMPARISON PLOT
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Seburn1 - total activity, beam breaks per min, 3 day test light



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested15 strains16 strains
Mean of the strain means25.8   n/min 22.0   n/min
Median of the strain means24.5   n/min 20.0   n/min
SD of the strain means± 8.96 ± 7.77
Coefficient of variation (CV)0.347 0.352
Min–max range of strain means14.2   –   41.4   n/min 11.2   –   38.5   n/min
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 725.9282 725.9282 19.8224 < 0.0001
strain 14 15337.199 1095.5142 29.9144 < 0.0001
sex:strain 14 767.7418 54.8387 1.4974 0.1139
Residuals 210 7690.535 36.6216


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 14.2 2.77   8 0.978 0.195 10.1, 18.8 -1.3
129S1/SvImJ m 14.3 2.83   8 1.0 0.199 10.5, 20.2 -1.0
A/J f 20.7 3.09   8 1.09 0.149 14.5, 25.1 -0.57
A/J m 18.1 4.09   8 1.45 0.226 12.7, 25.1 -0.51
AKR/J f 24.5 4.32   8 1.53 0.176 20.3, 31.7 -0.15
AKR/J m 18.5 2.62   8 0.926 0.142 15.9, 23.5 -0.46
BALB/cJ f 27.0 5.29   8 1.87 0.196 21.1, 35.8 0.13
BALB/cJ m 26.1 3.11   8 1.1 0.119 21.2, 31.1 0.52
BTBR T+ Itpr3tf/J f 25.3 4.59   8 1.62 0.182 19.6, 32.6 -0.06
BTBR T+ Itpr3tf/J m 22.3 2.78   8 0.984 0.125 19.0, 26.3 0.03
C3H/HeJ f 17.7 1.79   8 0.634 0.101 15.3, 19.9 -0.91
C3H/HeJ m 13.3 2.15   8 0.761 0.161 10.6, 16.3 -1.13
C57BL/6J f 35.7 5.79   8 2.05 0.162 30.8, 45.4 1.1
C57BL/6J m 25.0 3.14   8 1.11 0.126 20.1, 29.2 0.38
CAST/EiJ f 41.4 10.9   8 3.84 0.262 26.6, 54.5 1.74
CAST/EiJ m 33.1 10.1   8 3.57 0.305 19.8, 51.5 1.42
CBA/J f 22.8 4.65   8 1.64 0.204 18.6, 33.7 -0.34
CBA/J m 19.2 4.1   8 1.45 0.213 14.1, 26.0 -0.37
FVB/NJ f 36.5 6.79   8 2.4 0.186 25.9, 44.3 1.19
FVB/NJ m 38.5 19.2   8 6.77 0.497 23.5, 83.7 2.12
LP/J f 15.1 6.3   8 2.23 0.417 2.8, 21.8 -1.2
LP/J m 15.8 3.22   8 1.14 0.203 10.8, 22.4 -0.8
NOD/ShiLtJ f 41.0 8.18   8 2.89 0.2 27.8, 52.6 1.69
NOD/ShiLtJ m 33.5 4.73   8 1.67 0.141 25.0, 38.1 1.47
NZB/BlNJ f 17.9 3.71   8 1.31 0.208 12.7, 22.5 -0.88
NZB/BlNJ m 11.2 3.54   8 1.25 0.315 7.1, 18.7 -1.4
PL/J f 21.1 3.42   8 1.21 0.162 16.0, 24.8 -0.53
PL/J m 20.8 3.15   8 1.11 0.151 15.4, 25.1 -0.16
SJL/J m 18.0 2.23   8 0.787 0.123 15.3, 21.4 -0.52
SWR/J f 26.3 4.79   8 1.69 0.182 20.4, 35.0 0.05
SWR/J m 25.0 5.58   8 1.97 0.224 18.5, 34.3 0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 14.2 2.1396 18.4178 9.9822
129S1/SvImJ m 14.2625 2.1396 18.4803 10.0447
A/J f 20.725 2.1396 24.9428 16.5072
A/J m 18.125 2.1396 22.3428 13.9072
AKR/J f 24.5 2.1396 28.7178 20.2822
AKR/J m 18.4875 2.1396 22.7053 14.2697
BALB/cJ f 26.95 2.1396 31.1678 22.7322
BALB/cJ m 26.1125 2.1396 30.3303 21.8947
BTBR T+ Itpr3tf/J f 25.3 2.1396 29.5178 21.0822
BTBR T+ Itpr3tf/J m 22.3125 2.1396 26.5303 18.0947
C3H/HeJ f 17.7 2.1396 21.9178 13.4822
C3H/HeJ m 13.35 2.1396 17.5678 9.1322
C57BL/6J f 35.7125 2.1396 39.9303 31.4947
C57BL/6J m 25.0125 2.1396 29.2303 20.7947
CAST/EiJ f 41.4375 2.1396 45.6553 37.2197
CAST/EiJ m 33.1375 2.1396 37.3553 28.9197
CBA/J f 22.775 2.1396 26.9928 18.5572
CBA/J m 19.25 2.1396 23.4678 15.0322
FVB/NJ f 36.5 2.1396 40.7178 32.2822
FVB/NJ m 38.5375 2.1396 42.7553 34.3197
LP/J f 15.1125 2.1396 19.3303 10.8947
LP/J m 15.8375 2.1396 20.0553 11.6197
NOD/ShiLtJ f 40.9625 2.1396 45.1803 36.7447
NOD/ShiLtJ m 33.5125 2.1396 37.7303 29.2947
NZB/BlNJ f 17.875 2.1396 22.0928 13.6572
NZB/BlNJ m 11.2375 2.1396 15.4553 7.0197
PL/J f 21.075 2.1396 25.2928 16.8572
PL/J m 20.8375 2.1396 25.0553 16.6197
SWR/J f 26.3125 2.1396 30.5303 22.0947
SWR/J m 24.95 2.1396 29.1678 20.7322


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 14.2312 1.5129 17.2137 11.2488
A/J both 19.425 1.5129 22.4074 16.4426
AKR/J both 21.4938 1.5129 24.4762 18.5113
BALB/cJ both 26.5312 1.5129 29.5137 23.5488
BTBR T+ Itpr3tf/J both 23.8062 1.5129 26.7887 20.8238
C3H/HeJ both 15.525 1.5129 18.5074 12.5426
C57BL/6J both 30.3625 1.5129 33.3449 27.3801
CAST/EiJ both 37.2875 1.5129 40.2699 34.3051
CBA/J both 21.0125 1.5129 23.9949 18.0301
FVB/NJ both 37.5187 1.5129 40.5012 34.5363
LP/J both 15.475 1.5129 18.4574 12.4926
NOD/ShiLtJ both 37.2375 1.5129 40.2199 34.2551
NZB/BlNJ both 14.5562 1.5129 17.5387 11.5738
PL/J both 20.9562 1.5129 23.9387 17.9738
SWR/J both 25.6312 1.5129 28.6137 22.6488




  GWAS USING LINEAR MIXED MODELS