Project measure / variable:   Seburn1   RER_light

ID, description, units MPD:9215   RER_light   respiratory exchange ratio, 3 day test   [ratio]  light  
Data set, strains Seburn1   inbred   16 strains     sex: both     age: 7-9wks
Procedure monitoring system
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  STRAIN COMPARISON PLOT
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Seburn1 - respiratory exchange ratio, 3 day test light



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains14 strains
Mean of the strain means0.722   ratio 0.718   ratio
Median of the strain means0.755   ratio 0.732   ratio
SD of the strain means± 0.0728 ± 0.0812
Coefficient of variation (CV)0.101 0.113
Min–max range of strain means0.616   –   0.815   ratio 0.606   –   0.817   ratio
Mean sample size per strain8.0   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0022 0.0022 4.306 0.04
strain 8 0.8519 0.1065 210.542 < 0.0001
sex:strain 8 0.013 0.0016 3.2031 0.0024
Residuals 126 0.0637 0.0005


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.629 0.00991   8 0.0035 0.0158 0.62, 0.64 -1.28
129S1/SvImJ m 0.626 0.0119   8 0.0042 0.019 0.61, 0.64 -1.13
A/J f 0.616 0.0262   8 0.00925 0.0424 0.57, 0.65 -1.46
A/J m 0.606 0.0141   8 0.00498 0.0232 0.59, 0.63 -1.38
AKR/J m 0.621 0.0331   8 0.0117 0.0533 0.57, 0.68 -1.2
BALB/cJ f 0.769 0.0309   8 0.0109 0.0402 0.72, 0.81 0.64
BALB/cJ m 0.794 0.035   8 0.0124 0.0441 0.71, 0.82 0.94
BTBR T+ Itpr3tf/J f 0.642 0.0198   8 0.00701 0.0308 0.61, 0.68 -1.1
BTBR T+ Itpr3tf/J m 0.625 0.0251   8 0.00886 0.0401 0.58, 0.66 -1.15
C3H/HeJ m 0.656 0.00916   8 0.00324 0.014 0.64, 0.67 -0.76
C57BL/6J f 0.75 0.0421   8 0.0149 0.0561 0.7, 0.8 0.38
CAST/EiJ f 0.77 0.0185   8 0.00655 0.024 0.74, 0.8 0.66
CAST/EiJ m 0.788 0.0276   8 0.00977 0.0351 0.76, 0.82 0.86
CBA/J f 0.646 0.0297   8 0.0105 0.046 0.61, 0.7 -1.04
FVB/NJ m 0.677 0.0381   8 0.0135 0.0562 0.63, 0.76 -0.51
LP/J f 0.755 0.0107   8 0.00378 0.0142 0.74, 0.77 0.45
LP/J m 0.789 0.0196   8 0.00693 0.0248 0.76, 0.81 0.87
NOD/ShiLtJ m 0.79 0.0193   8 0.00681 0.0244 0.76, 0.82 0.89
NZB/BlNJ f 0.786 0.0262   8 0.00925 0.0333 0.75, 0.84 0.88
NZB/BlNJ m 0.774 0.013   8 0.0046 0.0168 0.76, 0.8 0.69
PL/J f 0.765 0.0374   8 0.0132 0.0489 0.71, 0.82 0.59
PL/J m 0.799 0.0155   8 0.00549 0.0194 0.78, 0.82 1.0
SJL/J m 0.691 0.00835   8 0.00295 0.0121 0.68, 0.71 -0.33
SWR/J f 0.815 0.0214   8 0.00756 0.0262 0.79, 0.84 1.28
SWR/J m 0.817 0.0149   8 0.00526 0.0182 0.8, 0.85 1.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.6288 0.008 0.6445 0.613
129S1/SvImJ m 0.6263 0.008 0.642 0.6105
A/J f 0.6163 0.008 0.632 0.6005
A/J m 0.6063 0.008 0.622 0.5905
BALB/cJ f 0.7688 0.008 0.7845 0.753
BALB/cJ m 0.7938 0.008 0.8095 0.778
BTBR T+ Itpr3tf/J f 0.6425 0.008 0.6582 0.6268
BTBR T+ Itpr3tf/J m 0.625 0.008 0.6407 0.6093
CAST/EiJ f 0.77 0.008 0.7857 0.7543
CAST/EiJ m 0.7875 0.008 0.8032 0.7718
LP/J f 0.755 0.008 0.7707 0.7393
LP/J m 0.7888 0.008 0.8045 0.773
NZB/BlNJ f 0.7863 0.008 0.802 0.7705
NZB/BlNJ m 0.7738 0.008 0.7895 0.758
PL/J f 0.765 0.008 0.7807 0.7493
PL/J m 0.7988 0.008 0.8145 0.783
SWR/J f 0.815 0.008 0.8307 0.7993
SWR/J m 0.8175 0.008 0.8332 0.8018


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.6275 0.0056 0.6386 0.6164
A/J both 0.6113 0.0056 0.6224 0.6001
BALB/cJ both 0.7813 0.0056 0.7924 0.7701
BTBR T+ Itpr3tf/J both 0.6338 0.0056 0.6449 0.6226
CAST/EiJ both 0.7788 0.0056 0.7899 0.7676
LP/J both 0.7719 0.0056 0.783 0.7607
NZB/BlNJ both 0.78 0.0056 0.7911 0.7689
PL/J both 0.7819 0.0056 0.793 0.7707
SWR/J both 0.8163 0.0056 0.8274 0.8051




  GWAS USING LINEAR MIXED MODELS