Project measure / variable:   CSNA03   dist_l60_cont_in_d1

ID, description, units MPD:90382   dist_l60_cont_in_d1   distance traveled, last 60 min (post-injection), on successive days, saline control, founders   [cm]  day 1  
Data set, strains CSNA03   inbred w/CC8   9 strains     sex: both     age: 8-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled, last 60 min (post-injection), on successive days, saline control, founders day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means13533.0   cm 8089.0   cm
Median of the strain means15242.0   cm 7331.0   cm
SD of the strain means± 12709.0 ± 6631.0
Coefficient of variation (CV)0.9391 0.8198
Min–max range of strain means905.1   –   38818.0   cm 770.0   –   15286.0   cm
Mean sample size per strain6.9   mice 6.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 707840867.8931 707840867.8931 4.9539 0.0282
strain 8 9274250053.0707 1159281256.6338 8.1133 < 0.0001
sex:strain 8 1219196518.8869 152399564.8609 1.0666 0.3922
Residuals 105 15003119722.652 142886854.5014


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 905.1 1030.0   8 364.2 1.138 -0.99
129S1/SvImJ m 770.0 1384.0   8 489.3 1.7972 -1.1
A/J f 1286.0 1014.0   7 383.2 0.7885 342.3, 3034.0 -0.96
A/J m 1694.0 856.2   8 302.7 0.5055 178.2, 2718.0 -0.96
C57BL/6J f 15242.0 21577.0   7 8155.0 1.4156 3694.0, 64030.0 0.13
C57BL/6J m 7331.0 1888.0   6 770.8 0.2575 4275.0, 8970.0 -0.11
CAST/EiJ f 20102.0 3223.0   7 1218.0 0.1603 15492.0, 23293.0 0.52
CAST/EiJ m 14775.0 3637.0   7 1375.0 0.2462 10094.0, 20881.0 1.01
DBA/2J f 4473.0 2044.0   3 1180.0 0.4569 2149.0, 5991.0 -0.71
DBA/2J m 2806.0 4304.0   3 2485.0 1.5341 110.3, 7769.0 -0.8
NOD/ShiLtJ f 38818.0 52551.0   5 23502.0 1.3538 9343.0, 132232.0 1.99
NOD/ShiLtJ m 15286.0 5882.0   5 2631.0 0.3848 8413.0, 24487.0 1.09
NZO/HlLtJ f 1835.0 1035.0   10 327.2 0.564 719.6, 3782.0 -0.92
NZO/HlLtJ m 1078.0 609.7   9 203.2 0.5655 26.63, 1901.0 -1.06
PWK/PhJ f 21222.0 5116.0   8 1809.0 0.2411 15279.0, 29175.0 0.6
PWK/PhJ m 14239.0 4706.0   8 1664.0 0.3305 6313.0, 21763.0 0.93
WSB/EiJ f 17916.0 8297.0   7 3136.0 0.4631 11186.0, 35297.0 0.34
WSB/EiJ m 14825.0 2004.0   7 757.3 0.1351 12860.0, 18252.0 1.02


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 905.124625 4226.2106919415 9284.9197352576 -7474.6704852576
129S1/SvImJ m 770.044 4226.2106919415 9149.8391102576 -7609.7511102576
A/J f 1285.8 4518.0092724474 10244.1777925564 -7672.5777925565
A/J m 1693.9125 4226.2106919415 10073.7076102576 -6685.8826102576
C57BL/6J f 15242.2857142857 4518.0092724474 24200.6635068422 6283.9079217293
C57BL/6J m 7330.8333333333 4880.007761289 17006.9872586556 -2345.3205919889
CAST/EiJ f 20102.2857142857 4518.0092724474 29060.6635068422 11143.9079217293
CAST/EiJ m 14775.0 4518.0092724475 23733.3777925565 5816.6222074436
DBA/2J f 4473.0 6901.3731605009 18157.1481128004 -9211.1481128004
DBA/2J m 2805.5 6901.3731605009 16489.6481128004 -10878.6481128004
NOD/ShiLtJ f 38817.6 5345.7806633166 49417.2955495823 28217.9044504176
NOD/ShiLtJ m 15285.8 5345.7806633166 25885.4955495823 4686.1044504176
NZO/HlLtJ f 1834.56 3780.0377577671 9329.6766016225 -5660.5566016225
NZO/HlLtJ m 1078.1255555556 3984.5096519933 8978.6721521116 -6822.4210410005
PWK/PhJ f 21221.5 4226.2106919415 29601.2951102576 12841.7048897424
PWK/PhJ m 14239.0 4226.2106919415 22618.7951102576 5859.2048897424
WSB/EiJ f 17916.4285714286 4518.0092724474 26874.806363985 8958.0507788721
WSB/EiJ m 14825.2857142857 4518.0092724474 23783.6635068422 5866.9079217293


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 837.5843125 2988.3822389949 6762.994259917 -5087.825634917
A/J both 1489.85625 3093.2694919212 7623.2382445456 -4643.5257445456
C57BL/6J both 11286.5595238095 3325.164790509 17879.7470583162 4693.3719893028
CAST/EiJ both 17438.6428571429 3194.7149940113 23773.1725426905 11104.1131715952
DBA/2J both 3639.25 4880.007761289 13315.4039253223 -6036.9039253223
NOD/ShiLtJ both 27051.7 3780.0377577671 34546.8166016225 19556.5833983774
NZO/HlLtJ both 1456.3427777778 2746.1337648125 6901.4187505322 -3988.7331949767
PWK/PhJ both 17730.25 2988.382238995 23655.659947417 11804.840052583
WSB/EiJ both 16370.8571428571 3194.7149940113 22705.3868284048 10036.3274573095




  GWAS USING LINEAR MIXED MODELS