Project measure / variable:   CSNA03   entrance_w_gray_in

ID, description, units MPD:90283   entrance_w_gray_in   percentage of entrance counts in novel zone, including center gray zone (novelty preference), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 12wks
Procedure conditioned place preference test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of entrance counts in novel zone, including center gray zone (novelty preference), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means32.854   % 33.851   %
Median of the strain means32.803   % 32.662   %
SD of the strain means± 3.2093 ± 3.3812
Coefficient of variation (CV)0.0977 0.0999
Min–max range of strain means27.985   –   38.3   % 30.231   –   41.041   %
Mean sample size per strain40.4   mice 39.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 166.5261 166.5261 3.6267 0.0572
strain 9 7368.3886 818.7098 17.8303 < 0.0001
sex:strain 9 354.6902 39.41 0.8583 0.5625
Residuals 777 35677.2806 45.9167


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 38.3 7.1012   42 1.0957 0.1854 25.926, 54.55 1.7
129S1/SvImJ m 41.041 15.116   45 2.2534 0.3683 13.514, 100.0 2.13
A/J f 31.712 6.7385   60 0.86994 0.2125 17.978, 51.06 -0.36
A/J m 32.522 6.8902   61 0.8822 0.2119 12.222, 50.0 -0.39
C57BL/6J f 29.537 5.1366   58 0.67446 0.1739 19.549, 44.944 -1.03
C57BL/6J m 30.231 5.6026   55 0.75546 0.1853 19.512, 50.0 -1.07
C57BL/6NJ f 27.985 7.346   9 2.4487 0.2625 18.889, 42.857 -1.52
C57BL/6NJ m 32.398 7.1909   10 2.274 0.222 20.0, 40.506 -0.43
CAST/EiJ f 30.087 5.984   31 1.0748 0.1989 4.0, 37.647 -0.86
CAST/EiJ m 30.918 4.9482   28 0.93511 0.16 13.415, 36.585 -0.87
DBA/2J f 35.413 4.973   24 1.0151 0.1404 21.739, 44.681 0.8
DBA/2J m 33.736 6.8905   23 1.4368 0.2043 18.232, 44.118 -0.03
NOD/ShiLtJ f 33.894 5.3904   42 0.83176 0.159 19.685, 49.02 0.32
NOD/ShiLtJ m 32.802 6.2792   39 1.0055 0.1914 4.3478, 42.857 -0.31
NZO/HlLtJ f 34.231 7.0016   44 1.0555 0.2045 17.476, 48.315 0.43
NZO/HlLtJ m 35.701 6.1152   43 0.93255 0.1713 21.311, 50.79 0.55
PWK/PhJ f 31.634 4.4496   43 0.67856 0.1407 19.672, 43.353 -0.38
PWK/PhJ m 31.419 4.0565   42 0.62593 0.1291 22.535, 40.426 -0.72
WSB/EiJ f 35.744 4.9646   51 0.69518 0.1389 21.368, 46.377 0.9
WSB/EiJ m 37.745 5.6666   47 0.82656 0.1501 23.188, 52.0 1.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 38.3001904762 1.0455883067 40.3527030965 36.2476778559
129S1/SvImJ m 41.0413555556 1.0101342716 43.0242711327 39.0584399784
A/J f 31.7115666667 0.8748019404 33.42882193 29.9943114033
A/J m 32.5223606557 0.867601802 34.2254818906 30.8192394209
C57BL/6J f 29.5371551724 0.8897569031 31.2837673531 27.7905429917
C57BL/6J m 30.2313636364 0.9137008273 32.0249782619 28.4377490108
C57BL/6NJ f 27.9853333333 2.2587288977 32.4192673574 23.5513993092
C57BL/6NJ m 32.3985 2.1428183801 36.6048991533 28.1921008467
CAST/EiJ f 30.0866129032 1.2170390576 32.4756870819 27.6975387245
CAST/EiJ m 30.9175714286 1.2805789162 33.4313757337 28.4037671234
DBA/2J f 35.412625 1.3831833167 38.1278439781 32.6974060219
DBA/2J m 33.7355217391 1.4129325979 36.5091392041 30.9619042741
NOD/ShiLtJ f 33.894 1.0455883067 35.9465126203 31.8414873797
NOD/ShiLtJ m 32.8018923077 1.085058265 34.9318853158 30.6718992996
NZO/HlLtJ f 34.2312954545 1.0215485805 36.2366175686 32.2259733405
NZO/HlLtJ m 35.7006976744 1.033358783 37.7292034733 33.6721918755
PWK/PhJ f 31.6335581395 1.033358783 33.6620639384 29.6050523407
PWK/PhJ m 31.4185714286 1.0455883067 33.4710840489 29.3660588083
WSB/EiJ f 35.7441960784 0.9488559272 37.6068209308 33.8815712261
WSB/EiJ m 37.7454893617 0.9884084144 39.6857566079 35.8052221155


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 39.6707730159 0.7269157712 41.0977245079 38.2438215238
A/J both 32.1169636612 0.6160380106 33.326259694 30.9076676284
C57BL/6J both 29.8842594044 0.6376747894 31.1360289054 28.6324899034
C57BL/6NJ both 30.1919166667 1.5567214622 33.2477948043 27.1360385291
CAST/EiJ both 30.5020921659 0.8833270103 32.2360823271 28.7681020047
DBA/2J both 34.5740733696 0.9886322134 36.5147799381 32.633366801
NOD/ShiLtJ both 33.3479461538 0.7534265634 34.8269389083 31.8689533994
NZO/HlLtJ both 34.9659965645 0.7265314647 36.3921936544 33.5397994746
PWK/PhJ both 31.5260647841 0.7350315098 32.9689476477 30.0831819204
WSB/EiJ both 36.7448427201 0.6850691141 38.0896483126 35.4000371275




  GWAS USING LINEAR MIXED MODELS