Project measure / variable:   CSNA03   light_dark_transitions_LD_do

ID, description, units MPD:90264   light_dark_transitions_LD_do   total number of light-dark transitions, 20 min test (LD box), DO   [n]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means90.99   n 84.44   n
Median of the strain means106.1   n 87.53   n
SD of the strain means± 43.174 ± 37.929
Coefficient of variation (CV)0.4745 0.4492
Min–max range of strain means32.0   –   139.0   n 27.049   –   129.1   n
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 42926.4683 42926.4683 6.5338 0.0106
strain 8 1431011.056 178876.382 27.2268 < 0.0001
sex:strain 8 76199.7637 9524.9705 1.4498 0.1705
Residuals 3667 24091675.5679 6569.8597


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 32.0 47.62   49 6.8029 1.4881 1.0, 232.0 -1.37
129S1/SvImJ m 40.939 55.22   49 7.8887 1.3489 1.0, 276.0 -1.15
A/J f 38.317 46.999   60 6.0675 1.2266 1.0, 251.0 -1.22
A/J m 27.049 30.333   61 3.8838 1.1214 1.0, 120.0 -1.51
C57BL/6J f 72.98 27.634   60 3.5675 0.3786 1.0, 159.0 -0.42
C57BL/6J m 87.53 61.41   59 7.9952 0.7017 34.0, 488.0 0.08
CAST/EiJ f 139.0 78.21   33 13.615 0.5627 42.0, 545.0 1.11
CAST/EiJ m 129.1 99.83   30 18.226 0.7734 17.0, 566.0 1.18
J:DO f 106.1 78.21   1496 2.0221 0.7368 2.0, 1540.0 0.35
J:DO m 99.56 87.9   1403 2.3466 0.8829 1.0, 2421.0 0.4
NOD/ShiLtJ f 118.9 54.96   47 8.0171 0.4621 38.0, 359.0 0.65
NOD/ShiLtJ m 120.2 59.26   44 8.9341 0.4929 58.0, 423.0 0.94
NZO/HlLtJ f 48.979 25.562   47 3.7286 0.5219 9.0, 144.0 -0.97
NZO/HlLtJ m 53.13 23.612   46 3.4814 0.4444 10.0, 124.0 -0.83
PWK/PhJ f 129.5 179.7   47 26.219 1.3881 46.0, 833.0 0.89
PWK/PhJ m 76.06 61.98   48 8.9454 0.8148 4.0, 460.0 -0.22
WSB/EiJ f 133.1 85.45   55 11.522 0.6422 67.0, 657.0 0.98
WSB/EiJ m 126.4 101.9   51 14.271 0.8063 61.0, 683.0 1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 32.0 11.5792387338 54.7023842081 9.2976157919
129S1/SvImJ m 40.9387755102 11.5792387338 63.6411597183 18.2363913021
A/J f 38.3166666667 10.4641130482 58.8327230567 17.8006102766
A/J m 27.0491803279 10.3779871963 47.3963774152 6.7019832405
C57BL/6J f 72.9833333333 10.4641130482 93.4993897234 52.4672769433
C57BL/6J m 87.5254237288 10.5524193652 108.2146144659 66.8362329917
CAST/EiJ f 139.0 14.1098071558 166.6638447929 111.3361552071
CAST/EiJ m 129.0666666667 14.7984905909 158.0807518599 100.0525814735
J:DO f 106.1463903743 2.0956186331 110.255083567 102.0376971817
J:DO m 99.5573770492 2.1639599193 103.8000609275 95.3146931708
NOD/ShiLtJ f 118.9361702128 11.8230389162 142.1165517693 95.7557886562
NOD/ShiLtJ m 120.2272727273 12.2194514394 144.1848650843 96.2696803703
NZO/HlLtJ f 48.9787234043 11.8230389162 72.1591049608 25.7983418477
NZO/HlLtJ m 53.1304347826 11.9508592679 76.5614223418 29.6994472234
PWK/PhJ f 129.4893617021 11.8230389162 152.6697432586 106.3089801456
PWK/PhJ m 76.0625 11.69923405 99.0001483592 53.1248516408
WSB/EiJ f 133.0545454545 10.9294096265 154.4828674895 111.6262234195
WSB/EiJ m 126.3921568627 11.349924171 148.6449443894 104.1393693361


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 36.4693877551 8.1877582297 52.5223975778 20.4163779324
A/J both 32.6829234973 7.3688581227 47.1303886652 18.2354583294
C57BL/6J both 80.2543785311 7.4305318845 94.8227619619 65.6859951002
CAST/EiJ both 134.0333333333 10.2235265655 154.0776931904 113.9889734762
J:DO both 102.8518837118 1.5061822589 105.8049213954 99.8988460282
NOD/ShiLtJ both 119.58172147 8.5014593261 136.2497771503 102.9136657897
NZO/HlLtJ both 51.0545790934 8.4054637953 67.5344248687 34.5747333182
PWK/PhJ both 102.7759308511 8.3164945526 119.0813425398 86.4705191623
WSB/EiJ both 129.7233511586 7.8783369672 145.1697062136 114.2769961036




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA