Project measure / variable:   CSNA03   vert_counts_dark_LD_do

ID, description, units MPD:90258   vert_counts_dark_LD_do   vertical counts in dark, 20 min test (LD box), DO+I138   [n]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means93.67   n 117.9   n
Median of the strain means105.3   n 128.9   n
SD of the strain means± 36.668 ± 47.654
Coefficient of variation (CV)0.3915 0.404
Min–max range of strain means10.98   –   128.8   n 18.163   –   169.1   n
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 383110.2532 383110.2532 44.3026 < 0.0001
strain 8 1758841.1 219855.1375 25.4239 < 0.0001
sex:strain 8 108191.966 13523.9957 1.5639 0.1302
Residuals 3667 31710648.3948 8647.5725


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.98 39.192   49 5.5988 3.5695 -2.26
129S1/SvImJ m 18.163 54.23   49 7.7465 2.9854 -2.09
A/J f 64.92 85.75   60 11.071 1.321 -0.78
A/J m 83.85 105.1   61 13.457 1.2534 -0.72
C57BL/6J f 128.8 119.8   60 15.462 0.9301 0.96
C57BL/6J m 169.1 115.3   59 15.014 0.6822 40.0, 498.0 1.07
CAST/EiJ f 105.3 98.4   33 17.129 0.9345 11.0, 444.0 0.32
CAST/EiJ m 143.9 124.7   30 22.76 0.8665 1.0, 459.0 0.54
J:DO f 120.0 92.45   1496 2.3902 0.7704 0.72
J:DO m 139.7 91.62   1403 2.4461 0.656 0.46
NOD/ShiLtJ f 115.1 85.0   47 12.398 0.7384 2.0, 452.0 0.58
NOD/ShiLtJ m 166.3 110.6   44 16.67 0.665 47.0, 488.0 1.01
NZO/HlLtJ f 117.1 81.83   47 11.937 0.699 20.0, 530.0 0.64
NZO/HlLtJ m 89.5 37.841   46 5.5794 0.4228 46.0, 279.0 -0.6
PWK/PhJ f 90.15 80.74   47 11.777 0.8956 29.0, 438.0 -0.1
PWK/PhJ m 122.1 108.5   48 15.666 0.8886 0.09
WSB/EiJ f 90.69 101.0   55 13.624 1.1141 24.0, 478.0 -0.08
WSB/EiJ m 128.9 129.5   51 18.14 1.0047 0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.9795918367 13.2846178581 37.0255613176 -15.0663776441
129S1/SvImJ m 18.1632653061 13.2846178581 44.209234787 -7.8827041747
A/J f 64.9166666667 12.0052575359 88.4543080749 41.3790252584
A/J m 83.8524590164 11.9064471516 107.1963716865 60.5085463463
C57BL/6J f 128.7666666667 12.0052575359 152.3043080749 105.2290252585
C57BL/6J m 169.0508474576 12.1065695222 192.7871222727 145.3145726426
CAST/EiJ f 105.303030303 16.187885959 137.0411795033 73.5648811028
CAST/EiJ m 143.8666666667 16.977998027 177.1539183724 110.5794149609
J:DO f 119.993315508 2.4042593263 124.7071330754 115.2794979406
J:DO m 139.6607270135 2.4826658513 144.5282692857 134.7931847413
NOD/ShiLtJ f 115.1063829787 13.5643246965 141.7007487969 88.5120171606
NOD/ShiLtJ m 166.2727272727 14.0191204741 193.7587707492 138.7866837962
NZO/HlLtJ f 117.0638297872 13.5643246965 143.6581956054 90.4694639691
NZO/HlLtJ m 89.5 13.7109703064 116.3818808315 62.6181191685
PWK/PhJ f 90.1489361702 13.5643246965 116.7433019884 63.5545703521
PWK/PhJ m 122.1458333333 13.4222859688 148.4617164427 95.8299502239
WSB/EiJ f 90.6909090909 12.5390825459 115.2751737493 66.1066444325
WSB/EiJ m 128.9411764706 13.0215300674 154.4713331039 103.4110198373


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 14.5714285714 9.3936433729 32.9887102139 -3.8458530711
A/J both 74.3845628415 8.4541364473 90.9598367594 57.8092889236
C57BL/6J both 148.9087570621 8.5248934612 165.6227579683 132.194756156
CAST/EiJ both 124.5848484848 11.7292377078 147.5813223492 101.5883746205
J:DO both 129.8270212608 1.7280113308 133.2149794892 126.4390630324
NOD/ShiLtJ both 140.6895551257 9.7535460646 159.8124659872 121.5666442643
NZO/HlLtJ both 103.2819148936 9.6434124045 122.1888964765 84.3749333107
PWK/PhJ both 106.1473847518 9.5413398574 124.854241764 87.4405277396
WSB/EiJ both 109.8160427807 9.038650845 127.5373221259 92.0947634356




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA