Project measure / variable:   CSNA03   vert_counts_light_LD_do

ID, description, units MPD:90255   vert_counts_light_LD_do   vertical counts in light, 20 min test (LD box), DO   [n]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means77.29   n 100.6   n
Median of the strain means75.32   n 102.5   n
SD of the strain means± 45.744 ± 63.33
Coefficient of variation (CV)0.5919 0.6298
Min–max range of strain means6.449   –   140.9   n 10.959   –   193.6   n
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 279718.8366 279718.8366 43.2482 < 0.0001
strain 8 3510613.2624 438826.6578 67.8484 < 0.0001
sex:strain 8 85639.7414 10704.9677 1.6551 0.1042
Residuals 3667 23717259.9055 6467.7556


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 6.449 17.834   49 2.5477 2.7654 -1.55
129S1/SvImJ m 10.959 33.846   49 4.8352 3.0884 -1.41
A/J f 32.433 49.48   60 6.3879 1.5256 -0.98
A/J m 38.525 78.65   61 10.07 2.0415 -0.98
C57BL/6J f 117.3 85.69   60 11.062 0.7304 7.0, 436.0 0.87
C57BL/6J m 162.8 86.23   59 11.226 0.5298 33.0, 431.0 0.98
CAST/EiJ f 96.42 69.28   33 12.06 0.7185 5.0, 326.0 0.42
CAST/EiJ m 137.4 104.6   30 19.105 0.7614 2.0, 438.0 0.58
J:DO f 120.8 81.88   1496 2.117 0.6778 0.95
J:DO m 137.3 83.7   1403 2.2345 0.6096 0.58
NOD/ShiLtJ f 140.9 96.17   47 14.028 0.6824 2.0, 475.0 1.39
NOD/ShiLtJ m 193.6 97.77   44 14.739 0.505 89.0, 470.0 1.47
NZO/HlLtJ f 35.404 25.83   47 3.7677 0.7296 3.0, 135.0 -0.92
NZO/HlLtJ m 30.696 19.014   46 2.8035 0.6195 1.0, 77.0 -1.1
PWK/PhJ f 75.32 57.1   47 8.3288 0.7581 23.0, 293.0 -0.04
PWK/PhJ m 91.25 62.34   48 8.9982 0.6832 -0.15
WSB/EiJ f 70.56 70.85   55 9.5531 1.004 18.0, 380.0 -0.15
WSB/EiJ m 102.5 96.3   51 13.484 0.9396 0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 6.4489795918 11.488908256 28.9742608607 -16.0763016771
129S1/SvImJ m 10.9591836735 11.488908256 33.4844649424 -11.5660975955
A/J f 32.4333333333 10.3824817464 52.7893424854 12.0773241813
A/J m 38.5245901639 10.2970277685 58.7130572969 18.3361230309
C57BL/6J f 117.3166666667 10.3824817464 137.6726758187 96.9606575146
C57BL/6J m 162.7627118644 10.4700991794 183.29050473 142.2349189988
CAST/EiJ f 96.4242424242 13.9997355309 123.8722795655 68.976205283
CAST/EiJ m 137.4333333333 14.6830464968 166.221077552 108.6455891147
J:DO f 120.8048128342 2.0792705607 124.8814538145 116.728171854
J:DO m 137.2950819672 2.1470787117 141.5046683622 133.0854955723
NOD/ShiLtJ f 140.9361702128 11.7308065356 163.9357199382 117.9366204873
NOD/ShiLtJ m 193.5909090909 12.124126616 217.3616065393 169.8202116426
NZO/HlLtJ f 35.4042553191 11.7308065356 58.4038050446 12.4047055937
NZO/HlLtJ m 30.6956521739 11.8576297514 53.9438529065 7.4474514413
PWK/PhJ f 75.3191489362 11.7308065356 98.3186986616 52.3195992107
PWK/PhJ m 91.25 11.60796748 114.0087101073 68.4912898927
WSB/EiJ f 70.5636363636 10.8441485125 91.8247945105 49.3024782168
WSB/EiJ m 102.4901960784 11.2613825927 124.569388002 80.4110041548


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.7040816326 8.1238849362 24.631860766 -7.2236975007
A/J both 35.4789617486 7.3113731282 49.8137211971 21.1442023002
C57BL/6J both 140.0396892655 7.3725657685 154.4944236848 125.5849548462
CAST/EiJ both 116.9287878788 10.1437720962 136.8167802366 97.0407955209
J:DO both 129.0499474007 1.4944324223 131.979948224 126.1199465774
NOD/ShiLtJ both 167.2635396518 8.4351388278 183.8015666257 150.725512678
NZO/HlLtJ both 33.0499537465 8.339892165 49.4012390544 16.6986684387
PWK/PhJ both 83.2845744681 8.2516169778 99.4627864623 67.1063624738
WSB/EiJ both 86.526916221 7.8168774913 101.8527731444 71.2010592977




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA