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Project measure / variable:   CSNA03   stereotypic_counts_dark_LD_in

ID, description, units MPD:90232   stereotypic_counts_dark_LD_in   stereotypic counts in dark, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - stereotypic counts in dark, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1552.0   n 1768.0   n
Median of the strain means1492.0   n 1630.0   n
SD of the strain means± 378.2 ± 469.0
Coefficient of variation (CV)0.2436 0.2652
Min–max range of strain means1168.0   –   2401.0   n 1267.0   –   2545.0   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13993287.5506 13993287.5506 34.5252 < 0.0001
strain 9 138316946.8987 15368549.6554 37.9184 < 0.0001
sex:strain 9 6209398.6893 689933.1877 1.7023 0.0844
Residuals 840 340457259.4847 405306.2613


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1327.0 1072.0   49 153.2 0.8079 -0.6
129S1/SvImJ m 1579.0 978.7   49 139.8 0.6198 -0.4
A/J f 1801.0 1101.0   60 142.2 0.6115 0.66
A/J m 2354.0 1067.0   61 136.7 0.4534 1.25
C57BL/6J f 1560.0 420.9   60 54.34 0.2698 0.02
C57BL/6J m 1900.0 347.6   59 45.253 0.1829 1353.0, 2802.0 0.28
C57BL/6NJ f 1571.0 427.2   13 118.5 0.272 713.0, 2516.0 0.05
C57BL/6NJ m 1487.0 607.2   13 168.4 0.4083 327.0, 2737.0 -0.6
CAST/EiJ f 1219.0 263.3   33 45.842 0.216 718.0, 1979.0 -0.88
CAST/EiJ m 1285.0 292.7   30 53.43 0.2277 427.0, 1879.0 -1.03
DBA/2J f 1823.0 332.2   24 67.81 0.1822 1326.0, 2428.0 0.72
DBA/2J m 2244.0 472.4   24 96.42 0.2105 1487.0, 3128.0 1.01
NOD/ShiLtJ f 1168.0 545.1   47 79.52 0.4668 504.0, 3939.0 -1.02
NOD/ShiLtJ m 1341.0 312.7   44 47.149 0.2332 703.0, 1914.0 -0.91
NZO/HlLtJ f 2401.0 530.8   47 77.42 0.2211 1338.0, 4053.0 2.24
NZO/HlLtJ m 2545.0 490.2   46 72.27 0.1926 1766.0, 3944.0 1.66
PWK/PhJ f 1424.0 361.5   47 52.73 0.2539 756.0, 2057.0 -0.34
PWK/PhJ m 1681.0 375.9   48 54.25 0.2236 1014.0, 2827.0 -0.19
WSB/EiJ f 1228.0 249.8   55 33.678 0.2033 724.0, 2208.0 -0.86
WSB/EiJ m 1267.0 323.9   51 45.361 0.2556 145.0, 1930.0 -1.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1327.4693877551 90.9480970273 1505.9815960577 1148.9571794525
129S1/SvImJ m 1579.1224489796 90.9480970273 1757.6346572822 1400.610240677
A/J f 1800.6666666667 82.1894418697 1961.9874556318 1639.3458777015
A/J m 2354.2459016393 81.5129740544 2514.2389249063 2194.2528783724
C57BL/6J f 1560.1833333333 82.1894418697 1721.5041222985 1398.8625443682
C57BL/6J m 1900.3898305085 82.8830359543 2063.0720004783 1737.7076605386
C57BL/6NJ f 1570.6923076923 176.5712454357 1917.2649571014 1224.1196582832
C57BL/6NJ m 1487.1538461538 176.5712454357 1833.726495563 1140.5811967447
CAST/EiJ f 1219.4242424242 110.824220809 1436.9491498898 1001.8993349587
CAST/EiJ m 1285.0333333333 116.233423376 1513.1753809806 1056.8912856861
DBA/2J f 1823.0416666667 129.9529179631 2078.1122301993 1567.9711031341
DBA/2J m 2243.8333333333 129.9529179631 2498.9038968659 1988.7627698007
NOD/ShiLtJ f 1167.8085106383 92.8630037974 1350.0792828626 985.537738414
NOD/ShiLtJ m 1341.3636363636 95.9765905752 1529.7457321846 1152.9815405426
NZO/HlLtJ f 2400.6595744681 92.8630037974 2582.9303466924 2218.3888022438
NZO/HlLtJ m 2544.9130434783 93.8669573399 2729.1543678059 2360.6717191506
PWK/PhJ f 1423.8510638298 92.8630037974 1606.1218360541 1241.5802916055
PWK/PhJ m 1681.3958333333 91.8905895267 1861.7579584883 1501.0337081784
WSB/EiJ f 1228.3636363636 85.8440723099 1396.8577051635 1059.8695675638
WSB/EiJ m 1267.1568627451 89.1469662633 1442.1338257745 1092.1798997157


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1453.2959183674 64.310016144 1579.5231113827 1327.068725352
A/J both 2077.456284153 57.8780383523 2191.0588418338 1963.8537264723
C57BL/6J both 1730.2865819209 58.3624494085 1844.8399378063 1615.7332260355
C57BL/6NJ both 1528.9230769231 124.8547250101 1773.986947494 1283.8592063521
CAST/EiJ both 1252.2287878788 80.2997768173 1409.8405571669 1094.6170185907
DBA/2J both 2033.4375 91.8905895267 2213.799625155 1853.075374845
NOD/ShiLtJ both 1254.586073501 66.7739534039 1385.6494631576 1123.5226838443
NZO/HlLtJ both 2472.7863089732 66.019965076 2602.3697762802 2343.2028416662
PWK/PhJ both 1552.6234485816 65.3211641006 1680.8353148398 1424.4115823234
WSB/EiJ both 1247.7602495544 61.8796944577 1369.2172263113 1126.3032727975




  GWAS USING LINEAR MIXED MODELS