Project measure / variable:   CSNA03   amb_counts_dark_LD_do

ID, description, units MPD:90222   amb_counts_dark_LD_do   ambulatory counts in dark, 20 min test (LD box), DO   [n]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means1348.0   n 1170.0   n
Median of the strain means1422.0   n 1255.0   n
SD of the strain means± 635.1 ± 546.8
Coefficient of variation (CV)0.4711 0.4673
Min–max range of strain means326.1   –   2023.0   n 347.7   –   1803.0   n
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 56387743.322 56387743.322 117.9445 < 0.0001
strain 8 276148847.5121 34518605.939 72.2015 < 0.0001
sex:strain 8 7269510.0957 908688.762 1.9007 0.0556
Residuals 3667 1753145459.1842 478087.1173


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 326.1 575.4   49 82.2 1.7642 -1.61
129S1/SvImJ m 347.7 444.3   49 63.47 1.2779 -1.5
A/J f 490.5 578.7   60 74.71 1.1798 -1.35
A/J m 420.2 363.6   61 46.554 0.8653 -1.37
C57BL/6J f 1160.0 378.6   60 48.875 0.3263 -0.3
C57BL/6J m 1255.0 575.9   59 74.97 0.4588 645.0, 4919.0 0.16
CAST/EiJ f 1927.0 685.4   33 119.3 0.3557 775.0, 5061.0 0.91
CAST/EiJ m 1717.0 801.4   30 146.3 0.4668 119.0, 4294.0 1.0
J:DO f 1422.0 873.2   1496 22.577 0.6142 6.0, 26388.0 0.12
J:DO m 1154.0 467.7   1403 12.486 0.4054 -0.03
NOD/ShiLtJ f 1859.0 959.1   47 139.9 0.516 753.0, 7183.0 0.8
NOD/ShiLtJ m 1618.0 453.4   44 68.35 0.2802 537.0, 3274.0 0.82
NZO/HlLtJ f 1057.0 456.6   47 66.6 0.432 454.0, 2604.0 -0.46
NZO/HlLtJ m 763.0 219.2   46 32.316 0.2873 405.0, 1459.0 -0.74
PWK/PhJ f 1867.0 1221.0   47 178.1 0.654 879.0, 6796.0 0.82
PWK/PhJ m 1452.0 617.0   48 89.05 0.425 16.0, 4130.0 0.52
WSB/EiJ f 2023.0 563.0   55 75.92 0.2783 1024.0, 3909.0 1.06
WSB/EiJ m 1803.0 715.1   51 100.1 0.3966 955.0, 4807.0 1.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 326.1428571428 98.7769201036 519.8059849731 132.4797293126
129S1/SvImJ m 347.6938775511 98.7769201036 541.3570053814 154.0307497208
A/J f 490.5166666666 89.2643188619 665.5292827342 315.504050599
A/J m 420.1967213114 88.5296206161 593.7688798294 246.6245627934
C57BL/6J f 1160.25 89.2643188619 1335.2626160675 985.2373839324
C57BL/6J m 1255.2542372881 90.0176176083 1431.7437792537 1078.7646953226
CAST/EiJ f 1926.9393939394 120.3639829991 2162.9263573036 1690.9524305752
CAST/EiJ m 1716.6666666667 126.2388103704 1964.1718818958 1469.1614514375
J:DO f 1421.7914438503 17.8767153044 1456.8407306427 1386.7421570578
J:DO m 1153.6650035638 18.4597019695 1189.8573004938 1117.4727066338
NOD/ShiLtJ f 1858.7659574468 100.8566622777 2056.5066509077 1661.0252639858
NOD/ShiLtJ m 1618.1136363636 104.2382669779 1822.484341599 1413.7429311283
NZO/HlLtJ f 1056.8510638298 100.8566622777 1254.5917572907 859.1103703689
NZO/HlLtJ m 762.9565217391 101.9470362612 962.8350145557 563.0780289225
PWK/PhJ f 1867.0638297872 100.8566622777 2064.8045232482 1669.3231363263
PWK/PhJ m 1451.5833333333 99.8005424702 1647.2533865569 1255.9132801097
WSB/EiJ f 2023.2 93.2335403277 2205.9947158063 1840.4052841937
WSB/EiJ m 1803.0784313725 96.8207477879 1992.9062660105 1613.2505967346


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 336.9183673469 69.84583003 473.8588783015 199.9778563924
A/J both 455.356693989 62.8601868202 578.601075195 332.1123127829
C57BL/6J both 1207.752118644 63.3862960381 1332.0279954324 1083.4762418557
CAST/EiJ both 1821.803030303 87.2119912156 1992.791829968 1650.814230638
J:DO both 1287.728223707 12.8485169074 1312.919168815 1262.5372785991
NOD/ShiLtJ both 1738.4397969052 72.521863304 1880.626968451 1596.2526253594
NZO/HlLtJ both 909.9037927845 71.7029715706 1050.4854360928 769.3221494762
PWK/PhJ both 1659.3235815603 70.9440177237 1798.4172115177 1520.2299516029
WSB/EiJ both 1913.1392156863 67.206305962 2044.9046464051 1781.3737849675




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA