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Project measure / variable:   CSNA03   amb_counts_dark_LD_in

ID, description, units MPD:90220   amb_counts_dark_LD_in   ambulatory counts in dark, 20 min test (LD box), founders   [n]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - ambulatory counts in dark, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1289.0   n 1129.0   n
Median of the strain means1194.0   n 1204.0   n
SD of the strain means± 610.9 ± 531.3
Coefficient of variation (CV)0.474 0.4706
Min–max range of strain means326.1   –   2023.0   n 347.7   –   1803.0   n
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5833972.5808 5833972.5808 15.7414 < 0.0001
strain 9 275879555.5807 30653283.9534 82.7095 < 0.0001
sex:strain 9 5299264.1793 588807.131 1.5887 0.1141
Residuals 840 311315738.3046 370613.9742


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 326.1 575.4   49 82.2 1.7642 -1.58
129S1/SvImJ m 347.7 444.3   49 63.47 1.2779 -1.47
A/J f 490.5 578.7   60 74.71 1.1798 -1.31
A/J m 420.2 363.6   61 46.554 0.8653 -1.33
C57BL/6J f 1160.0 378.6   60 48.875 0.3263 -0.21
C57BL/6J m 1255.0 575.9   59 74.97 0.4588 645.0, 4919.0 0.24
C57BL/6NJ f 949.3 293.4   13 81.37 0.3091 296.0, 1402.0 -0.56
C57BL/6NJ m 763.0 303.6   13 84.21 0.3979 157.0, 1191.0 -0.69
CAST/EiJ f 1927.0 685.4   33 119.3 0.3557 775.0, 5061.0 1.04
CAST/EiJ m 1717.0 801.4   30 146.3 0.4668 119.0, 4294.0 1.11
DBA/2J f 1229.0 263.8   24 53.85 0.2146 772.0, 1744.0 -0.1
DBA/2J m 1152.0 219.4   24 44.788 0.1905 674.0, 1604.0 0.04
NOD/ShiLtJ f 1859.0 959.1   47 139.9 0.516 753.0, 7183.0 0.93
NOD/ShiLtJ m 1618.0 453.4   44 68.35 0.2802 537.0, 3274.0 0.92
NZO/HlLtJ f 1057.0 456.6   47 66.6 0.432 454.0, 2604.0 -0.38
NZO/HlLtJ m 763.0 219.2   46 32.316 0.2873 405.0, 1459.0 -0.69
PWK/PhJ f 1867.0 1221.0   47 178.1 0.654 879.0, 6796.0 0.95
PWK/PhJ m 1452.0 617.0   48 89.05 0.425 16.0, 4130.0 0.61
WSB/EiJ f 2023.0 563.0   55 75.92 0.2783 1024.0, 3909.0 1.2
WSB/EiJ m 1803.0 715.1   51 100.1 0.3966 955.0, 4807.0 1.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 326.1428571429 86.9686753568 496.8442879428 155.441426343
129S1/SvImJ m 347.693877551 86.9686753568 518.3953083509 176.9924467511
A/J f 490.5166666667 78.5932539696 644.7788863544 336.2544469789
A/J m 420.1967213115 77.946384912 573.1892715094 267.2041711136
C57BL/6J f 1160.25 78.5932539696 1314.5122196877 1005.9877803122
C57BL/6J m 1255.2542372881 79.256499939 1410.8182709391 1099.6902036372
C57BL/6NJ f 949.3076923077 168.8453945004 1280.7161023699 617.8992822455
C57BL/6NJ m 763.0 168.8453945004 1094.4084100622 431.5915899378
CAST/EiJ f 1926.9393939394 105.9751220337 2134.9465285329 1718.9322593459
CAST/EiJ m 1716.6666666667 111.1476456749 1934.8263899109 1498.5069434225
DBA/2J f 1229.25 124.2668456341 1473.1599855633 985.3400144367
DBA/2J m 1151.6666666667 124.2668456341 1395.5766522299 907.7566811034
NOD/ShiLtJ f 1858.7659574468 88.7997956405 2033.061496713 1684.4704181807
NOD/ShiLtJ m 1618.1136363636 91.7771478504 1798.25309909 1437.9741736373
NZO/HlLtJ f 1056.8510638298 88.7997956405 1231.1466030959 882.5555245636
NZO/HlLtJ m 762.9565217391 89.7598213316 939.1363918682 586.7766516101
PWK/PhJ f 1867.0638297872 88.7997956405 2041.3593690534 1692.7682905211
PWK/PhJ m 1451.5833333333 87.8699292245 1624.0537381242 1279.1129285424
WSB/EiJ f 2023.2 82.0879765498 2184.3216336346 1862.0783663654
WSB/EiJ m 1803.0784313725 85.2463528255 1970.3993010775 1635.7575616676


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 336.9183673469 61.4961400956 457.6225066238 216.2142280701
A/J both 455.3566939891 55.3455926213 563.988587141 346.7248008372
C57BL/6J both 1207.7521186441 55.8088083373 1317.2932079539 1098.2110293342
C57BL/6NJ both 856.1538461538 119.3917234234 1090.4949802511 621.8127120566
CAST/EiJ both 1821.803030303 76.7862709557 1972.5185179675 1671.0875426385
DBA/2J both 1190.4583333333 87.8699292245 1362.9287381242 1017.9879285424
NOD/ShiLtJ both 1738.4397969052 63.8522681143 1863.7685256942 1613.1110681163
NZO/HlLtJ both 909.9037927845 63.1312704436 1033.8173530258 785.9902325431
PWK/PhJ both 1659.3235815603 62.4630454103 1781.925554971 1536.7216081496
WSB/EiJ both 1913.1392156863 59.1721568055 2029.2818588712 1796.9965725014




  GWAS USING LINEAR MIXED MODELS