Project measure / variable:   CSNA03   pct_vert_time_light_LD_in

ID, description, units MPD:90199   pct_vert_time_light_LD_in   percentage of time vertical in light, 20 min test (LD box), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
Ontology mappings

  •   Or, add this measure to your collection.
       
  •     no folder
  •     put it in new folder  

  STRAIN COMPARISON PLOT
Dimensions Width:   px    Height:   px
Download Plot   
Visualization Options

CSNA03 - percentage of time vertical in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means46.755   % 46.084   %
Median of the strain means49.08   % 47.142   %
SD of the strain means± 10.269 ± 14.348
Coefficient of variation (CV)0.2196 0.3113
Min–max range of strain means25.556   –   56.94   % 20.113   –   68.79   %
Mean sample size per strain42.4   mice 42.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1178.9831 1178.9831 2.4554 0.1175
strain 9 104466.3058 11607.3673 24.1736 < 0.0001
sex:strain 9 14198.6398 1577.6266 3.2856 0.0006
Residuals 824 395656.9903 480.1663


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 56.94 41.233   38 6.6889 0.7242 0.99
129S1/SvImJ m 38.051 40.814   46 6.0177 1.0726 -0.56
A/J f 33.522 37.588   60 4.8526 1.1213 -1.29
A/J m 20.113 30.585   61 3.916 1.5207 -1.81
C57BL/6J f 53.12 16.601   60 2.1431 0.3125 16.322, 100.0 0.62
C57BL/6J m 54.77 13.518   59 1.7599 0.2468 26.046, 87.12 0.61
C57BL/6NJ f 54.37 22.35   13 6.1988 0.411 21.574, 99.77 0.74
C57BL/6NJ m 68.79 14.966   13 4.1509 0.2176 42.914, 98.47 1.58
CAST/EiJ f 51.19 12.651   33 2.2023 0.2472 28.571, 81.36 0.43
CAST/EiJ m 51.67 13.6   30 2.483 0.2632 28.317, 89.31 0.39
DBA/2J f 44.991 8.4823   24 1.7314 0.1885 32.972, 66.39 -0.17
DBA/2J m 48.011 13.474   24 2.7503 0.2806 21.545, 78.57 0.13
NOD/ShiLtJ f 56.46 14.616   47 2.132 0.2589 0.84388, 87.88 0.95
NOD/ShiLtJ m 59.98 9.8858   44 1.4903 0.1648 43.671, 85.46 0.97
NZO/HlLtJ f 25.556 15.116   47 2.2049 0.5915 2.1164, 61.61 -2.06
NZO/HlLtJ m 29.024 13.395   46 1.975 0.4615 0.06017, 52.35 -1.19
PWK/PhJ f 46.97 13.407   47 1.9556 0.2854 25.214, 85.62 0.02
PWK/PhJ m 44.16 8.7389   47 1.2747 0.1979 31.104, 64.46 -0.13
WSB/EiJ f 44.434 14.293   55 1.9272 0.3217 21.417, 90.21 -0.23
WSB/EiJ m 46.272 14.999   50 2.1212 0.3242 20.085, 97.44 0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 56.9382105263 3.5547087023 63.915560251 49.9608608017
129S1/SvImJ m 38.0506917391 3.2308507777 44.3923578706 31.7090256077
A/J f 33.521529 2.8289169023 39.0742603832 27.9687976168
A/J m 20.1126872131 2.8056332397 25.6197163263 14.6056581
C57BL/6J f 53.1191 2.8289169023 58.6718313832 47.5663686168
C57BL/6J m 54.7669830508 2.852790042 60.3665737575 49.1673923442
C57BL/6NJ f 54.3745384615 6.0774884135 66.3037190667 42.4453578564
C57BL/6NJ m 68.7926153846 6.0774884135 80.7217959898 56.8634347795
CAST/EiJ f 51.1869090909 3.8145107729 58.6742105606 43.6996076212
CAST/EiJ m 51.6718333333 4.00069265 59.5245813637 43.819085303
DBA/2J f 44.991375 4.4729103613 53.771014203 36.211735797
DBA/2J m 48.0112916667 4.4729103613 56.7909308697 39.2316524637
NOD/ShiLtJ f 56.4587846809 3.1962952304 62.7326235559 50.1849458058
NOD/ShiLtJ m 59.9849090909 3.3034632323 66.4691023695 53.5007158124
NZO/HlLtJ f 25.5555680851 3.1962952304 31.8294069602 19.28172921
NZO/HlLtJ m 29.0237602174 3.2308507777 35.3654263488 22.682094086
PWK/PhJ f 46.9703617021 3.1962952304 53.2442005772 40.696522827
PWK/PhJ m 44.1604893617 3.1962952304 50.4343282368 37.8866504866
WSB/EiJ f 44.4340181818 2.9547073395 50.2336569618 38.6343794018
WSB/EiJ m 46.2722 3.0989232014 52.3549124687 40.1894875313


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 47.4944511327 2.4017884329 52.2087946316 42.7801076338
A/J both 26.8171081066 1.9921313157 30.7273573143 22.9068588988
C57BL/6J both 53.9430415254 2.0088044867 57.8860176189 50.0000654319
C57BL/6NJ both 61.5835769231 4.2974332697 70.018781423 53.1483724232
CAST/EiJ both 51.4293712121 2.7638756356 56.8544365326 46.0043058916
DBA/2J both 46.5013333333 3.1628252481 52.7094757501 40.2931909165
NOD/ShiLtJ both 58.2218468859 2.2983239832 62.7331054881 53.7105882837
NZO/HlLtJ both 27.2896641512 2.2723721058 31.7499831856 22.8293451169
PWK/PhJ both 45.5654255319 2.2601220321 50.0016995446 41.1291515193
WSB/EiJ both 45.3531090909 2.1408888615 49.5553466186 41.1508715632




  GWAS USING LINEAR MIXED MODELS