Project measure / variable:   CSNA03   stereotypic_time_dark_LD_do

ID, description, units MPD:90174   stereotypic_time_dark_LD_do   stereotypic time in dark, 20 min test (LD box), DO   [s]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 4-25wks
Procedure light-dark box
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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means85.77   s 100.6   s
Median of the strain means79.88   s 97.17   s
SD of the strain means± 29.556 ± 34.165
Coefficient of variation (CV)0.3446 0.3397
Min–max range of strain means58.92   –   150.8   s 65.78   –   160.1   s
Mean sample size per strain210.4   mice 199.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 348728.7655 348728.7655 270.7565 < 0.0001
strain 8 777674.9558 97209.3695 75.4743 < 0.0001
sex:strain 8 24086.3639 3010.7955 2.3376 0.0167
Residuals 3667 4723020.5333 1287.9794


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 84.62 66.63   49 9.5193 0.7875 -0.04
129S1/SvImJ m 102.1 61.18   49 8.7407 0.5991 0.04
A/J f 110.9 69.95   60 9.0303 0.6307 0.85
A/J m 145.7 66.5   61 8.5148 0.4564 1.32
C57BL/6J f 79.88 22.758   60 2.938 0.2849 -0.2
C57BL/6J m 97.17 20.557   59 2.6763 0.2116 62.76, 152.6 -0.1
CAST/EiJ f 59.48 16.828   33 2.9294 0.2829 25.64, 120.1 -0.89
CAST/EiJ m 65.78 18.517   30 3.3808 0.2815 22.52, 127.0 -1.02
J:DO f 90.87 35.82   1496 0.9261 0.3942 7.64, 263.7 0.17
J:DO m 111.4 33.217   1403 0.88681 0.2982 0.32
NOD/ShiLtJ f 58.92 32.108   47 4.6834 0.5449 18.32, 222.0 -0.91
NOD/ShiLtJ m 67.52 17.303   44 2.6085 0.2563 34.12, 101.3 -0.97
NZO/HlLtJ f 150.8 35.431   47 5.1681 0.235 69.68, 243.6 2.2
NZO/HlLtJ m 160.1 31.893   46 4.7024 0.1992 109.8, 253.1 1.74
PWK/PhJ f 72.69 19.594   47 2.858 0.2695 27.16, 114.5 -0.44
PWK/PhJ m 89.39 25.793   48 3.7228 0.2885 52.44, 220.0 -0.33
WSB/EiJ f 63.8 13.433   55 1.8114 0.2106 31.68, 104.4 -0.74
WSB/EiJ m 65.95 17.034   51 2.3852 0.2583 7.68, 122.9 -1.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 84.6195918367 5.1269185957 94.6714854403 74.5676982332
129S1/SvImJ m 102.1346938776 5.1269185957 112.1865874811 92.082800274
A/J f 110.9083333333 4.6331764123 119.9921905224 101.8244761443
A/J m 145.7278688525 4.5950426246 154.7369605134 136.7187771915
C57BL/6J f 79.8836666667 4.6331764123 88.9675238557 70.7998094776
C57BL/6J m 97.1661016949 4.6722756406 106.3266172657 88.0055861241
CAST/EiJ f 59.4757575758 6.2473737999 71.7244281107 47.2270870408
CAST/EiJ m 65.776 6.5523009191 78.6225140354 52.9294859646
J:DO f 90.8699064171 0.9278732727 92.6891050724 89.0507077619
J:DO m 111.3962437634 0.9581326204 113.2747692322 109.5177182945
NOD/ShiLtJ f 58.9208510638 5.2348655616 69.184386689 48.6573154387
NOD/ShiLtJ m 67.5163636364 5.4103844176 78.1240234822 56.9087037905
NZO/HlLtJ f 150.7570212766 5.2348655616 161.0205569018 140.4934856514
NZO/HlLtJ m 160.0739130435 5.2914603476 170.4484090353 149.6994170517
PWK/PhJ f 72.6919148936 5.2348655616 82.9554505188 62.4283792685
PWK/PhJ m 89.39375 5.1800487048 99.5498110863 79.2376889137
WSB/EiJ f 63.8005454545 4.8391949369 73.2883248536 54.3127660555
WSB/EiJ m 65.9541176471 5.0253854014 75.806944141 56.1012911532


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 93.3771428572 3.6252789056 100.484904988 86.2693807263
A/J both 128.3181010929 3.2626959861 134.7149791202 121.9212230656
C57BL/6J both 88.5248841808 3.290003166 94.9753009688 82.0744673928
CAST/EiJ both 62.6258787879 4.5266523704 71.500883756 53.7508738198
J:DO both 101.1330750902 0.6668895952 102.4405862455 99.825563935
NOD/ShiLtJ both 63.2186073501 3.7641757728 70.5986922232 55.838522477
NZO/HlLtJ both 155.41546716 3.7216720052 162.7122186738 148.1187156463
PWK/PhJ both 81.0428324468 3.6822792545 88.2623500955 73.8233147981
WSB/EiJ both 64.8773315508 3.4882770127 71.7164862472 58.0381768544




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA