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Project measure / variable:   CSNA03   stereotypic_time_light_LD_in

ID, description, units MPD:90169   stereotypic_time_light_LD_in   stereotypic time in light, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - stereotypic time in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means50.14   s 56.7   s
Median of the strain means55.32   s 58.83   s
SD of the strain means± 12.531 ± 16.784
Coefficient of variation (CV)0.2499 0.296
Min–max range of strain means30.603   –   65.34   s 33.894   –   81.62   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4474.5356 4474.5356 6.2811 0.0124
strain 9 154206.4191 17134.0466 24.0518 < 0.0001
sex:strain 9 9995.764 1110.6404 1.5591 0.1233
Residuals 840 598398.93 712.3797


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 30.603 33.838   49 4.834 1.1057 0.4, 135.5 -1.56
129S1/SvImJ m 37.209 39.227   49 5.6038 1.0542 -1.16
A/J f 42.362 41.449   60 5.351 0.9784 -0.62
A/J m 33.894 42.311   61 5.4173 1.2483 0.2, 146.8 -1.36
C57BL/6J f 65.34 33.929   60 4.3803 0.5193 14.24, 215.8 1.21
C57BL/6J m 70.64 19.631   59 2.5558 0.2779 35.2, 147.4 0.83
C57BL/6NJ f 61.97 26.702   13 7.4059 0.4309 20.16, 134.6 0.94
C57BL/6NJ m 81.62 32.278   13 8.9523 0.3954 34.64, 154.4 1.48
CAST/EiJ f 57.52 17.426   33 3.0335 0.303 24.08, 119.1 0.59
CAST/EiJ m 62.04 20.231   30 3.6937 0.3261 0.6, 102.5 0.32
DBA/2J f 54.41 16.764   24 3.422 0.3081 29.64, 115.7 0.34
DBA/2J m 67.91 17.602   24 3.5931 0.2592 37.2, 96.4 0.67
NOD/ShiLtJ f 59.6 19.829   47 2.8924 0.3327 4.64, 104.2 0.76
NOD/ShiLtJ m 72.4 15.461   44 2.3308 0.2136 43.28, 116.0 0.94
NZO/HlLtJ f 32.343 15.826   47 2.3085 0.4893 3.16, 87.68 -1.42
NZO/HlLtJ m 38.734 17.328   46 2.5549 0.4474 2.28, 77.44 -1.07
PWK/PhJ f 56.23 24.446   47 3.5658 0.4347 26.12, 146.8 0.49
PWK/PhJ m 55.62 15.683   48 2.2636 0.282 0.6, 99.4 -0.06
WSB/EiJ f 40.973 12.369   55 1.6679 0.3019 24.8, 95.08 -0.73
WSB/EiJ m 46.932 16.483   51 2.3081 0.3512 20.68, 109.1 -0.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 30.6030612245 3.8129202441 38.0870310391 23.1190914099
129S1/SvImJ m 37.2087755102 3.8129202441 44.6927453248 29.7248056956
A/J f 42.362 3.445721208 49.1252344396 35.5987655604
A/J m 33.8937704918 3.4173608804 40.6013395038 27.1862014798
C57BL/6J f 65.3423333333 3.445721208 72.1055677729 58.5790988937
C57BL/6J m 70.6393220339 3.4747995396 77.4596311937 63.8190128741
C57BL/6NJ f 61.9723076923 7.4025966265 76.5020660288 47.4425493558
C57BL/6NJ m 81.6246153846 7.4025966265 96.1543737211 67.0948570482
CAST/EiJ f 57.5157575758 4.646209529 66.6353010337 48.3962141178
CAST/EiJ m 62.0366666667 4.8729856645 71.6013245367 52.4720087967
DBA/2J f 54.4141666667 5.4481635996 65.1077792561 43.7205540772
DBA/2J m 67.915 5.4481635996 78.6086125894 57.2213874106
NOD/ShiLtJ f 59.6021276596 3.8932010529 67.2436720132 51.9605833059
NOD/ShiLtJ m 72.3977272727 4.0237354834 80.2954835783 64.4999709672
NZO/HlLtJ f 32.3431914894 3.8932010529 39.984735843 24.7016471357
NZO/HlLtJ m 38.7336956522 3.9352909361 46.4578536971 31.0095376073
PWK/PhJ f 56.2308510638 3.8932010529 63.8723954175 48.5893067102
PWK/PhJ m 55.618125 3.8524334263 63.1796509774 48.0565990226
WSB/EiJ f 40.9734545455 3.5989384258 48.037422533 33.9094865579
WSB/EiJ m 46.9319607843 3.7374093958 54.2677185009 39.5962030677


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.9059183673 2.6961417607 39.1978841734 28.6139525612
A/J both 38.1278852459 2.4264866592 42.8905741434 33.3651963484
C57BL/6J both 67.9908276836 2.4467951735 72.7933779728 63.1882773944
C57BL/6NJ both 71.7984615385 5.234426273 82.0725521872 61.5243708897
CAST/EiJ both 59.7762121212 3.3664986363 66.3839491214 53.1684751211
DBA/2J both 61.1645833333 3.8524334263 68.7261093107 53.603057356
NOD/ShiLtJ both 65.9999274662 2.7994401976 71.4946466303 60.505208302
NZO/HlLtJ both 35.5384435708 2.7678298896 40.9711182714 30.1057688701
PWK/PhJ both 55.9244880319 2.7385332635 61.2996595458 50.549316518
WSB/EiJ both 43.9527076649 2.5942526277 49.0446862834 38.8607290464




  GWAS USING LINEAR MIXED MODELS