Project measure / variable:   CSNA03   pct_rest_time_light_LD_in

ID, description, units MPD:90163   pct_rest_time_light_LD_in   percentage of time resting in light, 20 min test (LD box), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of time resting in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means36.244   % 36.006   %
Median of the strain means35.303   % 36.032   %
SD of the strain means± 9.0977 ± 11.942
Coefficient of variation (CV)0.251 0.3317
Min–max range of strain means16.318   –   47.161   % 17.383   –   55.06   %
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 687.2229 687.2229 1.5924 0.2073
strain 9 74556.8408 8284.0934 19.1959 < 0.0001
sex:strain 9 5049.4095 561.0455 1.3001 0.2327
Residuals 840 362506.4742 431.5553


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 33.397 41.667   49 5.9524 1.2476 0.01782, 100.0 -0.31
129S1/SvImJ m 27.379 36.233   49 5.1761 1.3234 -0.72
A/J f 31.214 36.569   60 4.721 1.1716 0.00478767, 100.0 -0.55
A/J m 21.143 30.183   61 3.8645 1.4275 0.08078, 100.0 -1.24
C57BL/6J f 41.937 17.209   60 2.2217 0.4104 3.9597, 100.0 0.63
C57BL/6J m 41.157 10.535   59 1.3715 0.256 22.239, 69.21 0.43
C57BL/6NJ f 43.475 17.619   13 4.8866 0.4053 14.758, 81.93 0.79
C57BL/6NJ m 55.06 19.191   13 5.3228 0.3486 24.722, 91.32 1.6
CAST/EiJ f 45.853 10.528   33 1.8327 0.2296 12.628, 76.04 1.06
CAST/EiJ m 44.055 13.231   30 2.4157 0.3003 0.12414, 77.18 0.67
DBA/2J f 32.481 6.7611   24 1.3801 0.2082 15.64, 42.387 -0.41
DBA/2J m 35.491 10.95   24 2.2352 0.3085 17.305, 58.2 -0.04
NOD/ShiLtJ f 47.161 12.573   47 1.834 0.2666 2.3892, 77.62 1.2
NOD/ShiLtJ m 49.223 8.3445   44 1.258 0.1695 30.213, 81.19 1.11
NZO/HlLtJ f 16.318 8.3542   47 1.2186 0.512 1.1671, 40.835 -2.19
NZO/HlLtJ m 17.383 8.2371   46 1.2145 0.4739 1.3178, 41.26 -1.56
PWK/PhJ f 36.381 11.067   47 1.6142 0.3042 16.997, 74.76 0.02
PWK/PhJ m 32.594 8.2606   48 1.1923 0.2534 0.21258, 53.18 -0.29
WSB/EiJ f 34.225 10.532   55 1.4202 0.3077 17.806, 78.65 -0.22
WSB/EiJ m 36.574 11.618   51 1.6268 0.3176 11.468, 86.42 0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 33.3971816327 2.9677013933 39.2221625461 27.5722007192
129S1/SvImJ m 27.3794253061 2.9677013933 33.2044062195 21.5544443927
A/J f 31.2139384612 2.6819002169 36.4779510774 25.9499258449
A/J m 21.1433413115 2.6598265888 26.3640279842 15.9226546387
C57BL/6J f 41.936945 2.6819002169 47.2009576162 36.6729323838
C57BL/6J m 41.1572033898 2.7045326875 46.465638841 35.8487679386
C57BL/6NJ f 43.4746923077 5.7616459081 54.7836055026 32.1657791128
C57BL/6NJ m 55.0572307692 5.7616459081 66.3661439641 43.7483175744
CAST/EiJ f 45.8533333333 3.6162735148 52.9513264971 38.7553401696
CAST/EiJ m 44.055238 3.7927796597 51.4996760344 36.6107999656
DBA/2J f 32.48125 4.2404565714 40.8043847496 24.1581152504
DBA/2J m 35.4906666667 4.2404565714 43.8138014163 27.1675319171
NOD/ShiLtJ f 47.1614297872 3.0301861695 53.1090553271 41.2138042474
NOD/ShiLtJ m 49.2225454545 3.1317847309 55.3695878502 43.0755030588
NZO/HlLtJ f 16.3181446809 3.0301861695 22.2657702207 10.370519141
NZO/HlLtJ m 17.3825782609 3.0629458909 23.3945043239 11.3706521978
PWK/PhJ f 36.3814468085 3.0301861695 42.3290723484 30.4338212686
PWK/PhJ m 32.59430375 2.998455597 38.4796487722 26.7089587278
WSB/EiJ f 34.2250909091 2.8011534196 39.723172772 28.7270090462
WSB/EiJ m 36.5739019608 2.9089292094 42.2835252948 30.8642786268


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.3883034694 2.0984817797 34.5071869735 26.2694199652
A/J both 26.1786398863 1.8886017484 29.8855725185 22.4717072541
C57BL/6J both 41.5470741949 1.9044084273 45.2850320519 37.8091163379
C57BL/6NJ both 49.2659615385 4.0740988924 57.2625707464 41.2693523305
CAST/EiJ both 44.9542856667 2.620239096 50.0972703206 39.8113010128
DBA/2J both 33.9859583333 2.998455597 39.8713033555 28.1006133112
NOD/ShiLtJ both 48.1919876209 2.1788818131 52.4686796772 43.9152955646
NZO/HlLtJ both 16.8503614709 2.1542786352 21.0787626034 12.6219603383
PWK/PhJ both 34.4878752793 2.1314762601 38.6715200895 30.304230469
WSB/EiJ both 35.3994964349 2.0191786465 39.362724374 31.4362684959




  GWAS USING LINEAR MIXED MODELS