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Project measure / variable:   CSNA03   rest_time_light_LD_in

ID, description, units MPD:90157   rest_time_light_LD_in   resting time in light, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure light-dark box
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  STRAIN COMPARISON PLOT
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CSNA03 - resting time in light, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means237.0   s 248.8   s
Median of the strain means223.2   s 246.3   s
SD of the strain means± 61.8 ± 61.94
Coefficient of variation (CV)0.2608 0.249
Min–max range of strain means145.6   –   360.3   s 159.1   –   381.4   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 408.9665 408.9665 0.0086 0.9263
strain 9 2076551.3313 230727.9257 4.836 < 0.0001
sex:strain 9 609512.1053 67723.5673 1.4195 0.1751
Residuals 840 40076631.5168 47710.2756


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 360.3 476.1   49 68.01 1.3216 0.2, 1184.0 2.0
129S1/SvImJ m 296.9 443.6   49 63.37 1.4941 0.78
A/J f 296.9 395.5   60 51.06 1.3323 0.05, 1094.0 0.97
A/J m 194.8 308.1   61 39.454 1.5817 0.8, 1104.0 -0.87
C57BL/6J f 257.3 140.2   60 18.097 0.5449 39.6, 835.4 0.33
C57BL/6J m 274.2 79.93   59 10.406 0.2914 100.8, 490.1 0.41
C57BL/6NJ f 268.9 117.0   13 32.455 0.4351 74.76, 566.2 0.52
C57BL/6NJ m 381.4 147.4   13 40.873 0.3864 208.8, 727.5 2.14
CAST/EiJ f 223.9 65.3   33 11.367 0.2917 105.3, 480.2 -0.21
CAST/EiJ m 256.6 85.85   30 15.674 0.3345 1.32, 537.2 0.13
DBA/2J f 222.5 41.165   24 8.4027 0.185 115.7, 288.7 -0.23
DBA/2J m 263.5 76.34   24 15.583 0.2897 142.0, 452.3 0.24
NOD/ShiLtJ f 197.1 74.55   47 10.874 0.3782 19.28, 365.5 -0.65
NOD/ShiLtJ m 236.0 62.97   44 9.4935 0.2668 135.9, 451.9 -0.21
NZO/HlLtJ f 145.6 74.92   47 10.928 0.5146 11.64, 395.6 -1.48
NZO/HlLtJ m 159.1 74.86   46 11.038 0.4706 12.08, 384.2 -1.45
PWK/PhJ f 219.7 89.17   47 13.006 0.4058 98.52, 543.7 -0.28
PWK/PhJ m 214.5 60.16   48 8.6834 0.2805 2.08, 386.3 -0.55
WSB/EiJ f 177.6 81.75   55 11.023 0.4603 82.44, 525.0 -0.96
WSB/EiJ m 211.2 101.4   51 14.202 0.4802 68.5, 630.0 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 360.2532653061 31.2038314024 421.4998997406 299.0066308717
129S1/SvImJ m 296.8693877551 31.2038314024 358.1160221896 235.6227533206
A/J f 296.864 28.1987811838 352.212345541 241.515654459
A/J m 194.8244262295 27.966688503 249.7172220852 139.9316303739
C57BL/6J f 257.2566666667 28.1987811838 312.6050122077 201.9083211256
C57BL/6J m 274.2457627119 28.4367498009 330.0611911797 218.430334244
C57BL/6NJ f 268.9430769231 60.5806999066 387.8503974093 150.0357564368
C57BL/6NJ m 381.4153846154 60.5806999066 500.3227051016 262.5080641291
CAST/EiJ f 223.8666666667 38.0232287915 298.4983605693 149.234972764
CAST/EiJ m 256.6173333333 39.8790987926 334.8917142524 178.3429524143
DBA/2J f 222.5166666667 44.5861878908 310.0300849825 135.0032483508
DBA/2J m 263.5375 44.5861878908 351.0509183159 176.0240816841
NOD/ShiLtJ f 197.1293617021 31.8608262155 259.6655403795 134.5931830247
NOD/ShiLtJ m 236.0363636364 32.9290820674 300.6693064835 171.4034207892
NZO/HlLtJ f 145.594893617 31.8608262155 208.1310722944 83.0587149396
NZO/HlLtJ m 159.0917391304 32.2052775905 222.3040042529 95.879474008
PWK/PhJ f 219.7089361702 31.8608262155 282.2451148476 157.1727574928
PWK/PhJ m 214.5120833333 31.5271958048 276.3934148693 152.6307517974
WSB/EiJ f 177.6058181818 29.4526663757 235.4152796987 119.796356665
WSB/EiJ m 211.2050980392 30.5858725607 271.2388077278 151.1713883506


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 328.5613265306 22.0644407836 371.8692370641 285.2534159972
A/J both 245.8442131148 19.8576617838 284.8206752136 206.8677510159
C57BL/6J both 265.7512146893 20.0238607634 305.053890836 226.4485385425
C57BL/6NJ both 325.1792307692 42.837023713 409.2594034178 241.0990581207
CAST/EiJ both 240.242 27.5504466762 294.3177996775 186.1662003225
DBA/2J both 243.0270833333 31.5271958048 304.9084148693 181.1457517974
NOD/ShiLtJ both 216.5828626692 22.9098051767 261.5500477731 171.6156775654
NZO/HlLtJ both 152.3433163737 22.6511156006 196.8027476158 107.8838851316
PWK/PhJ both 217.1105097518 22.4113605257 261.0993516217 173.1216678818
WSB/EiJ both 194.4054581105 21.2306097236 236.0767316087 152.7341846123




  GWAS USING LINEAR MIXED MODELS