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Project measure / variable:   CSNA03   amb_time_tot_LD_in

ID, description, units MPD:90142   amb_time_tot_LD_in   total ambulatory time, 20 min test (LD box), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
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  STRAIN COMPARISON PLOT
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CSNA03 - total ambulatory time, 20 min test (LD box), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means96.36   s 87.09   s
Median of the strain means87.79   s 88.05   s
SD of the strain means± 49.593 ± 42.909
Coefficient of variation (CV)0.5147 0.4927
Min–max range of strain means21.637   –   160.1   s 26.711   –   147.0   s
Mean sample size per strain43.5   mice 42.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23614.1065 23614.1065 18.8032 < 0.0001
strain 9 1821928.1485 202436.4609 161.1942 < 0.0001
sex:strain 9 22682.8955 2520.3217 2.0069 0.0358
Residuals 840 1054917.8805 1255.8546


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 21.637 32.471   49 4.6387 1.5007 0.12, 151.7 -1.51
129S1/SvImJ m 26.711 27.357   49 3.9081 1.0242 0.32, 106.2 -1.41
A/J f 33.094 33.211   60 4.2876 1.0035 1.64, 158.8 -1.28
A/J m 28.82 24.986   61 3.1991 0.8669 2.6, 115.5 -1.36
C57BL/6J f 88.33 18.29   60 2.3612 0.207 35.0, 141.0 -0.16
C57BL/6J m 89.92 27.285   59 3.5523 0.3034 54.0, 242.0 0.07
C57BL/6NJ f 73.98 15.711   13 4.3575 0.2124 52.88, 105.4 -0.45
C57BL/6NJ m 68.77 15.985   13 4.4335 0.2324 32.28, 99.92 -0.43
CAST/EiJ f 152.6 48.193   33 8.3894 0.3158 70.48, 351.5 1.13
CAST/EiJ m 132.8 48.676   30 8.887 0.3664 6.12, 298.8 1.07
DBA/2J f 87.25 20.152   24 4.1135 0.231 57.92, 123.5 -0.18
DBA/2J m 86.17 17.174   24 3.5056 0.1993 48.16, 112.8 -0.02
NOD/ShiLtJ f 160.1 70.34   47 10.261 0.4395 67.0, 503.4 1.29
NOD/ShiLtJ m 147.0 27.628   44 4.1651 0.188 104.2, 240.6 1.4
NZO/HlLtJ f 67.96 24.531   47 3.5783 0.361 31.96, 135.5 -0.57
NZO/HlLtJ m 55.13 15.03   46 2.216 0.2726 27.76, 97.72 -0.74
PWK/PhJ f 129.8 57.23   47 8.3475 0.4407 69.0, 336.7 0.67
PWK/PhJ m 100.5 27.995   48 4.0407 0.2786 0.68, 175.8 0.31
WSB/EiJ f 148.8 31.859   55 4.2958 0.2141 85.56, 268.6 1.06
WSB/EiJ m 135.1 44.083   51 6.1729 0.3264 74.56, 354.2 1.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 21.6371428571 5.0625770233 31.5739291524 11.7003565619
129S1/SvImJ m 26.7112244898 5.0625770233 36.6480107851 16.7744381945
A/J f 33.0943333333 4.5750311833 42.0741684952 24.1144981715
A/J m 28.8204918033 4.5373759653 37.7264175999 19.9145660066
C57BL/6J f 88.334 4.5750311833 97.3138351618 79.3541648382
C57BL/6J m 89.9220338983 4.6136397259 98.9776496033 80.8664181933
C57BL/6NJ f 73.9846153846 9.8287436387 93.2763959621 54.6928348072
C57BL/6NJ m 68.7723076923 9.8287436387 88.0640882697 49.4805271149
CAST/EiJ f 152.6006060606 6.1689707891 164.7090133227 140.4921987985
CAST/EiJ m 132.844 6.4700711477 145.5434046737 120.1445953263
DBA/2J f 87.2491666667 7.2337594528 101.4475327288 73.0508006045
DBA/2J m 86.1716666667 7.2337594528 100.3700327288 71.9733006045
NOD/ShiLtJ f 160.0646808511 5.1691692812 170.2106855904 149.9186761117
NOD/ShiLtJ m 146.9818181818 5.3424854186 157.4680064702 136.4956298935
NZO/HlLtJ f 67.9582978723 5.1691692812 78.1043026117 57.812293133
NZO/HlLtJ m 55.1313043478 5.2250538165 65.3869988127 44.8756098829
PWK/PhJ f 129.8446808511 5.1691692812 139.9906855904 119.6986761117
PWK/PhJ m 100.4804166667 5.1150403625 110.520177591 90.4406557424
WSB/EiJ f 148.8090909091 4.7784642259 158.1882228441 139.429958974
WSB/EiJ m 135.0721568627 4.9623180457 144.8121556267 125.3321580988


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 24.1741836735 3.5797825434 31.2005526461 17.1478147009
A/J both 30.9574125683 3.2217499507 37.2810379887 24.6337871479
C57BL/6J both 89.1280169492 3.2487144322 95.5045680415 82.7514658569
C57BL/6NJ both 71.3784615385 6.9499712775 85.0198104059 57.737112671
CAST/EiJ both 142.7223030303 4.4698439921 151.4956776019 133.9489284587
DBA/2J both 86.7104166667 5.1150403625 96.750177591 76.6706557424
NOD/ShiLtJ both 153.5232495164 3.716936289 160.8188227802 146.2276762526
NZO/HlLtJ both 61.5448011101 3.6749659333 68.7579952903 54.3316069298
PWK/PhJ both 115.1625487589 3.6360675519 122.2993935027 108.0257040151
WSB/EiJ both 141.9406238859 3.4444999907 148.7014613299 135.1797864419




  GWAS USING LINEAR MIXED MODELS