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Project measure / variable:   CSNA03   pct_center_time_OFT_in

ID, description, units MPD:90109   pct_center_time_OFT_in   percentage of total time spent in center, 60 min test (OFT), founders   [%]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - percentage of total time spent in center, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means30.751   % 31.306   %
Median of the strain means30.374   % 32.562   %
SD of the strain means± 12.889 ± 13.211
Coefficient of variation (CV)0.4191 0.422
Min–max range of strain means9.3896   –   51.75   % 8.4829   –   50.86   %
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 109.9318 109.9318 0.7169 0.3974
strain 9 141322.5769 15702.5085 102.4018 < 0.0001
sex:strain 9 6107.2069 678.5785 4.4253 < 0.0001
Residuals 841 128960.6885 153.3421


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 38.355 23.797   48 3.4348 0.6204 1.7045, 83.33 0.59
129S1/SvImJ m 25.421 22.251   49 3.1786 0.8753 0.18083, 86.53 -0.45
A/J f 10.822 17.594   59 2.2905 1.6257 0.16103, 100.0 -1.55
A/J m 13.162 20.049   61 2.567 1.5233 0.15337, 94.39 -1.37
C57BL/6J f 40.886 6.5123   61 0.83381 0.1593 24.95, 56.79 0.79
C57BL/6J m 42.454 7.6841   59 1.0004 0.181 24.612, 68.54 0.84
C57BL/6NJ f 30.695 12.054   13 3.3432 0.3927 11.565, 51.41 0.0
C57BL/6NJ m 43.911 12.901   13 3.5782 0.2938 29.263, 73.4 0.95
CAST/EiJ f 36.731 11.851   33 2.063 0.3226 17.824, 82.83 0.46
CAST/EiJ m 33.371 7.0304   30 1.2836 0.2107 22.088, 54.98 0.16
DBA/2J f 29.812 11.06   24 2.2576 0.371 -0.07
DBA/2J m 34.612 9.3613   25 1.8723 0.2705 12.529, 53.82 0.25
NOD/ShiLtJ f 51.75 7.0456   47 1.0277 0.1361 34.917, 68.05 1.63
NOD/ShiLtJ m 50.86 7.6861   44 1.1587 0.1511 31.366, 64.74 1.48
NZO/HlLtJ f 9.3896 6.1255   47 0.89349 0.6524 0.17905, 32.412 -1.66
NZO/HlLtJ m 8.4829 3.3769   46 0.49789 0.3981 1.4077, 17.203 -1.73
PWK/PhJ f 30.053 6.3833   48 0.92134 0.2124 17.908, 50.73 -0.05
PWK/PhJ m 29.038 6.9872   47 1.0192 0.2406 17.816, 50.0 -0.17
WSB/EiJ f 29.015 6.3889   55 0.86148 0.2202 18.708, 56.09 -0.13
WSB/EiJ m 31.752 7.0382   52 0.97602 0.2217 19.93, 55.34 0.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 38.3548541667 1.7873518533 41.8630482835 34.8466600498
129S1/SvImJ m 25.4211808163 1.7690195548 28.8933925039 21.9489691288
A/J f 10.8222374576 1.6121471054 13.9865416657 7.6579332495
A/J m 13.1618454098 1.5854982104 16.2738434664 10.0498473532
C57BL/6J f 40.8863278689 1.5854982104 43.9983259254 37.7743298123
C57BL/6J m 42.4540338983 1.6121471054 45.6183381064 39.2897296902
C57BL/6NJ f 30.6947692308 3.4344642297 37.4358969962 23.9536414653
C57BL/6NJ m 43.9112307692 3.4344642297 50.6523585347 37.1701030038
CAST/EiJ f 36.730969697 2.1556274421 40.9620109978 32.4999283961
CAST/EiJ m 33.3708 2.2608411347 37.8083535533 28.9332464467
DBA/2J f 29.8117916667 2.5276972317 34.7731273662 24.8504559672
DBA/2J m 34.61224 2.4766273768 39.4733363626 29.7511436374
NOD/ShiLtJ f 51.7509574468 1.8062661563 55.2962763448 48.2056385488
NOD/ShiLtJ m 50.8577272727 1.866828126 54.5219165237 47.1935380217
NZO/HlLtJ f 9.3895648936 1.8062661563 12.9348837916 5.8442459956
NZO/HlLtJ m 8.4829152174 1.8257939255 12.0665630012 4.8992674336
PWK/PhJ f 30.0531041667 1.7873518533 33.5612982835 26.5449100498
PWK/PhJ m 29.0384893617 1.8062661563 32.5838082597 25.4931704637
WSB/EiJ f 29.0153090909 1.6697418368 32.29265959 25.7379585918
WSB/EiJ m 31.7518076923 1.7172321149 35.122371575 28.3812438096


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 31.8880174915 1.2573838747 34.3559964199 29.4200385631
A/J both 11.9920414337 1.1305776029 14.211126438 9.7729564294
C57BL/6J both 41.6701808836 1.1305776029 43.8892658879 39.4510958793
C57BL/6NJ both 37.303 2.4285329466 42.0696971558 32.5363028442
CAST/EiJ both 35.0508848485 1.5619004694 38.1165655245 31.9852041725
DBA/2J both 32.2120158333 1.7693880622 35.684950823 28.7390808437
NOD/ShiLtJ both 51.3043423598 1.2988114451 53.8536348575 48.7550498621
NZO/HlLtJ both 8.9362400555 1.2841457166 11.4567468263 6.4157332847
PWK/PhJ both 29.5457967642 1.2705534301 32.0396247479 27.0519687804
WSB/EiJ both 30.3835583916 1.1975938312 32.7341820951 28.0329346881




  GWAS USING LINEAR MIXED MODELS