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Project measure / variable:   CSNA03   time_perimeter_corners_OFT_in

ID, description, units MPD:90100   time_perimeter_corners_OFT_in   time in perimeter and corners, 60 min test (OFT), founders   [s]  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - time in perimeter and corners, 60 min test (OFT), founders



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means146.1   s 128.1   s
Median of the strain means130.4   s 120.1   s
SD of the strain means± 90.37 ± 78.64
Coefficient of variation (CV)0.6187 0.6138
Min–max range of strain means16.453   –   288.6   s 14.75   –   240.3   s
Mean sample size per strain43.4   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 100530.8537 100530.8537 30.1413 < 0.0001
strain 9 6101303.3039 677922.5893 203.2554 < 0.0001
sex:strain 9 39362.3478 4373.5942 1.3113 0.2267
Residuals 840 2801671.797 3335.3236


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 16.453 46.444   48 6.7036 2.8228 -1.43
129S1/SvImJ m 14.75 35.245   49 5.035 2.3894 0.04, 187.5 -1.44
A/J f 63.51 63.82   59 8.3085 1.0049 -0.91
A/J m 47.722 53.92   61 6.9039 1.1299 0.05, 195.7 -1.02
C57BL/6J f 135.4 36.332   61 4.6519 0.2683 77.76, 218.9 -0.12
C57BL/6J m 123.0 30.773   59 4.0062 0.2502 73.92, 200.0 -0.07
C57BL/6NJ f 100.8 46.368   13 12.86 0.4599 7.92, 208.0 -0.5
C57BL/6NJ m 93.23 38.892   13 10.787 0.4172 48.4, 203.6 -0.44
CAST/EiJ f 239.7 67.59   33 11.767 0.282 95.16, 377.2 1.04
CAST/EiJ m 210.1 61.82   30 11.287 0.2942 77.0, 344.9 1.04
DBA/2J f 125.5 27.895   23 5.8165 0.2223 61.88, 161.8 -0.23
DBA/2J m 117.2 46.49   25 9.2979 0.3966 7.32, 186.5 -0.14
NOD/ShiLtJ f 199.9 88.3   47 12.88 0.4417 98.96, 655.8 0.6
NOD/ShiLtJ m 184.3 48.837   44 7.3625 0.265 87.12, 308.0 0.71
NZO/HlLtJ f 57.88 52.55   47 7.6645 0.9079 2.48, 191.5 -0.98
NZO/HlLtJ m 46.255 45.357   46 6.6875 0.9806 1.88, 141.7 -1.04
PWK/PhJ f 232.9 41.627   48 6.0084 0.1787 160.6, 342.8 0.96
PWK/PhJ m 204.4 53.46   47 7.7973 0.2616 0.97
WSB/EiJ f 288.6 99.88   55 13.468 0.3461 126.4, 559.9 1.58
WSB/EiJ m 240.3 75.86   52 10.52 0.3156 120.2, 486.4 1.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 16.4529166667 8.3358207552 32.8143999705 0.0914333628
129S1/SvImJ m 14.7504081633 8.2503228976 30.9440769458 -1.4432606192
A/J f 63.5071186441 7.518703873 78.2647713691 48.749465919
A/J m 47.7224590164 7.3944192157 62.2361667955 33.2087512373
C57BL/6J f 135.4085245902 7.3944192157 149.9222323692 120.8948168111
C57BL/6J m 123.0061016949 7.518703873 137.76375442 108.2484489699
C57BL/6NJ f 100.8184615385 16.0175950558 132.2576709179 69.379252159
C57BL/6NJ m 93.2261538462 16.0175950558 124.6653632256 61.7869444667
CAST/EiJ f 239.7018181818 10.0533780962 259.4345095027 219.9691268609
CAST/EiJ m 210.1266666667 10.5440719013 230.8224879222 189.4308454111
DBA/2J f 125.4834782609 12.0421787134 149.1197717642 101.8471847575
DBA/2J m 117.2112 11.5504520566 139.8823362955 94.5400637045
NOD/ShiLtJ f 199.9268085106 8.4240329552 216.4614340256 183.3921829957
NOD/ShiLtJ m 184.3231818182 8.7064808252 201.4121937871 167.2341698493
NZO/HlLtJ f 57.8759574468 8.4240329552 74.4105829618 41.3413319318
NZO/HlLtJ m 46.2552173913 8.5151062285 62.9686008096 29.541833973
PWK/PhJ f 232.9270833333 8.3358207552 249.2885666372 216.5656000295
PWK/PhJ m 204.3659574468 8.4240329552 220.9005829618 187.8313319318
WSB/EiJ f 288.5636363636 7.787313188 303.848513336 273.2787593913
WSB/EiJ m 240.35 8.0087975279 256.0696046897 224.6303953103


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 15.601662415 5.8641652342 27.1117997354 4.0915250946
A/J both 55.6147888302 5.2727683305 65.9641369673 45.2654406932
C57BL/6J both 129.2073131425 5.2727683305 139.5566612796 118.8579650055
C57BL/6NJ both 97.0223076923 11.3261500822 119.2531858397 74.791429545
CAST/EiJ both 224.9142424242 7.2843644782 239.2119356316 210.6165492169
DBA/2J both 121.3473391304 8.3430661462 137.7230436306 104.9716346303
NOD/ShiLtJ both 192.1249951644 6.0573744228 204.0143619578 180.235628371
NZO/HlLtJ both 52.0655874191 5.9889766512 63.8207036053 40.3104712328
PWK/PhJ both 218.6465203901 5.9255851798 230.2772122958 207.0158284844
WSB/EiJ both 264.4568181818 5.5853174603 275.4196352885 253.4940010751




  GWAS USING LINEAR MIXED MODELS