Project measure / variable:   CSNA03   rears_OFT_in_bin9

ID, description, units MPD:90085   rears_OFT_in_bin9   number of rears in successive 5 min intervals, 60 min test (OFT), founders   [n]  40-45 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - number of rears in successive 5 min intervals, 60 min test (OFT), founders 40-45 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means37.608   n 49.821   n
Median of the strain means39.031   n 47.263   n
SD of the strain means± 22.169 ± 32.501
Coefficient of variation (CV)0.5895 0.6524
Min–max range of strain means3.5208   –   75.92   n 2.0408   –   106.3   n
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 29290.6505 29290.6505 22.9044 < 0.0001
strain 9 667838.7623 74204.3069 58.0255 < 0.0001
sex:strain 9 25099.2652 2788.8072 2.1808 0.0214
Residuals 841 1075489.6448 1278.8224


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.5208 16.066   48 2.319 4.5632 -1.54
129S1/SvImJ m 2.0408 6.8251   49 0.97501 3.3443 -1.47
A/J f 25.051 34.434   59 4.4829 1.3745 -0.57
A/J m 33.885 57.72   61 7.3897 1.7033 -0.49
C57BL/6J f 75.92 39.379   61 5.0419 0.5187 16.0, 174.0 1.73
C57BL/6J m 106.3 35.927   59 4.6773 0.3381 28.0, 193.0 1.74
C57BL/6NJ f 51.62 49.787   13 13.808 0.9646 0.63
C57BL/6NJ m 74.46 25.709   13 7.1303 0.3453 39.0, 118.0 0.76
CAST/EiJ f 38.061 50.42   33 8.7769 1.3247 9.0, 240.0 0.02
CAST/EiJ m 43.367 36.554   30 6.6738 0.8429 12.0, 151.0 -0.2
DBA/2J f 40.958 23.577   24 4.8126 0.5756 0.15
DBA/2J m 51.16 42.032   25 8.4065 0.8216 2.0, 207.0 0.04
NOD/ShiLtJ f 63.66 35.975   47 5.2476 0.5651 4.0, 223.0 1.18
NOD/ShiLtJ m 86.34 45.644   44 6.881 0.5286 17.0, 207.0 1.12
NZO/HlLtJ f 15.149 15.427   47 2.2503 1.0184 -1.01
NZO/HlLtJ m 11.391 11.484   46 1.6933 1.0082 -1.18
PWK/PhJ f 40.0 40.407   48 5.8322 1.0102 7.0, 229.0 0.11
PWK/PhJ m 56.15 34.669   47 5.0569 0.6174 0.19
WSB/EiJ f 22.145 25.175   55 3.3945 1.1368 3.0, 129.0 -0.7
WSB/EiJ m 33.115 39.451   52 5.4709 1.1913 -0.51


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.5208333333 5.161601834 13.6519673648 -6.6103006981
129S1/SvImJ m 2.0408163265 5.1086609285 12.0680385441 -7.986405891
A/J f 25.0508474576 4.65563702 34.1888794423 15.9128154729
A/J m 33.8852459016 4.5786790414 42.8722256316 24.8982661717
C57BL/6J f 75.9180327869 4.5786790414 84.9050125168 66.931053057
C57BL/6J m 106.2542372881 4.65563702 115.3922692728 97.1162053035
C57BL/6NJ f 51.6153846154 9.9182132682 71.0827420763 32.1480271545
C57BL/6NJ m 74.4615384615 9.9182132682 93.9288959224 54.9941810007
CAST/EiJ f 38.0606060606 6.2251260365 50.2792134363 25.8419986849
CAST/EiJ m 43.3666666667 6.5289672681 56.1816501946 30.5516831387
DBA/2J f 40.9583333333 7.2996073172 55.2859204828 26.6307461838
DBA/2J m 51.16 7.1521252999 65.1981111046 37.1218888954
NOD/ShiLtJ f 63.6595744681 5.2162234803 73.8979192527 53.4212296835
NOD/ShiLtJ m 86.3409090909 5.3911172894 96.9225334771 75.7592847047
NZO/HlLtJ f 15.1489361702 5.2162234803 25.3872809548 4.9105913856
NZO/HlLtJ m 11.3913043478 5.2726167244 21.7403371577 1.0422715379
PWK/PhJ f 40.0 5.161601834 50.1311340314 29.8688659686
PWK/PhJ m 56.1489361702 5.2162234803 66.3872809548 45.9105913856
WSB/EiJ f 22.1454545455 4.8219618935 31.6099471214 12.6809619695
WSB/EiJ m 33.1153846154 4.9591066341 42.8490633458 23.3817058849


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.7808248299 3.6311344637 9.907974719 -4.3463250591
A/J both 29.4680466796 3.264937129 35.8764285585 23.0596648008
C57BL/6J both 91.0861350375 3.264937129 97.4945169163 84.6777531587
C57BL/6NJ both 63.0384615385 7.0132358592 76.8039620108 49.2729610661
CAST/EiJ both 40.7136363636 4.5105323344 49.5668585034 31.8604142239
DBA/2J both 46.0591666667 5.109725122 56.0884776713 36.029855662
NOD/ShiLtJ both 75.0002417795 3.7507710216 82.3622129588 67.6382706002
NZO/HlLtJ both 13.270120259 3.7084186158 20.5489626125 5.9912779055
PWK/PhJ both 48.0744680851 3.6691661481 55.2762661365 40.8726700337
WSB/EiJ both 27.6304195804 3.4584698608 34.4186653285 20.8421738323




  GWAS USING LINEAR MIXED MODELS