Project measure / variable:   CSNA03   amb_dist_OFT_in_bin5

ID, description, units MPD:90031   amb_dist_OFT_in_bin5   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  20-25 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 20-25 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1099.0   cm 1093.0   cm
Median of the strain means1024.0   cm 1163.0   cm
SD of the strain means± 647.0 ± 576.6
Coefficient of variation (CV)0.5885 0.5275
Min–max range of strain means82.71   –   2003.0   cm 184.3   –   1901.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 837486.6024 837486.6024 2.2895 0.1306
strain 9 315041329.9926 35004592.2214 95.6957 < 0.0001
sex:strain 9 3605113.2086 400568.1343 1.0951 0.3637
Residuals 841 307630050.7249 365790.7856


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 82.71 189.3   48 27.324 2.2888 -1.57
129S1/SvImJ m 184.3 346.0   49 49.425 1.8775 -1.58
A/J f 472.8 593.8   59 77.31 1.2561 -0.97
A/J m 417.8 599.8   61 76.8 1.4358 -1.17
C57BL/6J f 1149.0 276.6   61 35.41 0.2408 500.6, 1786.0 0.08
C57BL/6J m 1132.0 288.6   59 37.569 0.255 625.5, 1991.0 0.07
C57BL/6NJ f 806.8 234.3   13 64.97 0.2904 378.8, 1069.0 -0.45
C57BL/6NJ m 1194.0 1192.0   13 330.5 0.9977 365.9, 4932.0 0.17
CAST/EiJ f 1741.0 1042.0   33 181.4 0.5987 658.0, 6951.0 0.99
CAST/EiJ m 1541.0 705.6   30 128.8 0.458 606.7, 4498.0 0.78
DBA/2J f 898.8 311.2   24 63.53 0.3463 4.32, 1334.0 -0.31
DBA/2J m 1096.0 284.0   25 56.8 0.2593 383.8, 1669.0 0.01
NOD/ShiLtJ f 2003.0 874.8   47 127.6 0.4367 767.4, 5393.0 1.4
NOD/ShiLtJ m 1901.0 803.4   44 121.1 0.4225 875.4, 4880.0 1.4
NZO/HlLtJ f 511.6 524.1   47 76.45 1.0245 -0.91
NZO/HlLtJ m 411.0 204.7   46 30.18 0.4981 -1.18
PWK/PhJ f 1685.0 414.8   48 59.88 0.2462 608.0, 2606.0 0.9
PWK/PhJ m 1483.0 455.6   47 66.46 0.3072 0.68
WSB/EiJ f 1644.0 880.3   55 118.7 0.5354 656.3, 6569.0 0.84
WSB/EiJ m 1571.0 893.6   52 123.9 0.5687 509.0, 5672.0 0.83


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 82.7071666667 87.2962849584 254.0513330337 -88.6369997004
129S1/SvImJ m 184.2756122449 86.4009147771 353.8623560896 14.6888684002
A/J f 472.7527288136 78.7390870181 627.3009232991 318.204534328
A/J m 417.7619016393 77.4375248599 569.7554045584 265.7683987203
C57BL/6J f 1148.6459016393 77.4375248599 1300.6394045584 996.6523987203
C57BL/6J m 1131.8271186441 78.7390870181 1286.3753131296 977.2789241586
C57BL/6NJ f 806.8384615385 167.7431153332 1136.082761846 477.5941612309
C57BL/6NJ m 1194.2692307692 167.7431153332 1523.5135310768 865.0249304617
CAST/EiJ f 1740.9090909091 105.2832810178 1947.5579308566 1534.2602509615
CAST/EiJ m 1540.7033333333 110.4220366959 1757.4384651344 1323.9682015322
DBA/2J f 898.8008333333 123.455590133 1141.1180772431 656.4835894235
DBA/2J m 1095.508 120.961280688 1332.9294413826 858.0865586174
NOD/ShiLtJ f 2003.2446808511 88.2200808956 2176.4020634946 1830.0872982076
NOD/ShiLtJ m 1901.4386363636 91.1779959552 2080.4017814208 1722.4754913065
NZO/HlLtJ f 511.5837234043 88.2200808956 684.7411060477 338.4263407608
NZO/HlLtJ m 410.9675 89.1738392182 585.9969087529 235.9380912471
PWK/PhJ f 1684.9083333333 87.2962849584 1856.2524997004 1513.5641669663
PWK/PhJ m 1483.2468085106 88.2200808956 1656.4041911541 1310.0894258672
WSB/EiJ f 1644.0709090909 81.5520788032 1804.1404122169 1484.0014059649
WSB/EiJ m 1571.2846153846 83.8715576666 1735.9067655384 1406.6624652308


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 133.4913894558 61.4120497986 254.0302701498 12.9525087617
A/J both 445.2573152265 55.2186881428 553.6399353142 336.8746951387
C57BL/6J both 1140.2365101417 55.2186881428 1248.6191302294 1031.853890054
C57BL/6NJ both 1000.5538461539 118.6122943495 1233.3647235684 767.7429687394
CAST/EiJ both 1640.8062121212 76.2849845152 1790.5375218133 1491.074902429
DBA/2J both 997.1544166667 86.4189130931 1166.7764874035 827.5323459298
NOD/ShiLtJ both 1952.3416586074 63.4354191671 2076.8519859428 1827.8313312719
NZO/HlLtJ both 461.2756117021 62.7191284102 584.3800115954 338.1712118089
PWK/PhJ both 1584.077570922 62.0552657733 1705.8789486974 1462.2761931466
WSB/EiJ both 1607.6777622378 58.4918364871 1722.4848810853 1492.8706433903




  GWAS USING LINEAR MIXED MODELS