Project measure / variable:   CSNA03   amb_dist_OFT_in_bin2

ID, description, units MPD:90022   amb_dist_OFT_in_bin2   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  5-10 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 5-10 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1445.0   cm 1414.0   cm
Median of the strain means1315.0   cm 1351.0   cm
SD of the strain means± 856.4 ± 754.2
Coefficient of variation (CV)0.5926 0.5333
Min–max range of strain means414.6   –   2697.0   cm 418.5   –   2455.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1384862.0219 1384862.0219 1.8717 0.1717
strain 9 538190262.6157 59798918.0684 80.8191 < 0.0001
sex:strain 9 9375193.768 1041688.1964 1.4079 0.1802
Residuals 841 622264708.4646 739910.4738


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 414.6 1465.0   48 211.5 3.534 -1.2
129S1/SvImJ m 418.5 832.3   49 118.9 1.9887 -1.32
A/J f 469.6 534.5   59 69.58 1.1383 -1.14
A/J m 476.0 449.5   61 57.55 0.9443 -1.24
C57BL/6J f 1550.0 352.1   61 45.088 0.2272 732.2, 2440.0 0.12
C57BL/6J m 1389.0 290.5   59 37.814 0.2091 832.3, 2203.0 -0.03
C57BL/6NJ f 932.7 312.9   13 86.8 0.3355 269.8, 1449.0 -0.6
C57BL/6NJ m 1313.0 947.0   13 262.7 0.7214 674.6, 3428.0 -0.13
CAST/EiJ f 2697.0 2229.0   33 388.0 0.8264 1.46
CAST/EiJ m 2016.0 723.2   30 132.0 0.3587 949.2, 4731.0 0.8
DBA/2J f 1080.0 412.0   24 84.1 0.3813 47.0, 1926.0 -0.43
DBA/2J m 1222.0 337.7   25 67.55 0.2763 622.0, 1885.0 -0.26
NOD/ShiLtJ f 2271.0 1008.0   47 147.0 0.4438 1176.0, 7559.0 0.96
NOD/ShiLtJ m 2413.0 597.5   44 90.07 0.2476 1453.0, 3908.0 1.32
NZO/HlLtJ f 679.9 237.1   47 34.589 0.3488 296.1, 1399.0 -0.89
NZO/HlLtJ m 636.5 220.2   46 32.461 0.3459 120.9, 1220.0 -1.03
PWK/PhJ f 1811.0 399.1   48 57.61 0.2204 855.9, 2761.0 0.43
PWK/PhJ m 1805.0 958.1   47 139.7 0.5309 6.4758, 7441.0 0.52
WSB/EiJ f 2546.0 1259.0   55 169.8 0.4946 1328.0, 10623.0 1.29
WSB/EiJ m 2455.0 1012.0   52 140.3 0.4122 1034.0, 6337.0 1.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 414.6265083333 124.1563592309 658.3192139476 170.9338027191
129S1/SvImJ m 418.4824979592 122.8829270118 659.6757251351 177.2892707833
A/J f 469.5603728814 111.9859611206 689.3651579552 249.7555878075
A/J m 475.9844131148 110.1348260013 692.1558109946 259.8130152349
C57BL/6J f 1549.8557377049 110.1348260013 1766.0271355848 1333.6843398251
C57BL/6J m 1388.8627118644 111.9859611206 1608.6674969383 1169.0579267905
C57BL/6NJ f 932.6769230769 238.5711430417 1400.9416796263 464.4121665276
C57BL/6NJ m 1312.7615384615 238.5711430417 1781.0262950109 844.4967819122
CAST/EiJ f 2697.0909090908 149.7382032383 2990.995370425 2403.1864477567
CAST/EiJ m 2016.2066666666 157.0467524655 2324.4562662306 1707.9570671026
DBA/2J f 1080.4166666667 175.5836070792 1425.0501959977 735.7831373356
DBA/2J m 1222.332 172.0360978165 1560.0025180462 884.6614819537
NOD/ShiLtJ f 2270.5106382979 125.4702197267 2516.7821745174 2024.2391020783
NOD/ShiLtJ m 2413.1818181818 129.6770879214 2667.7105479828 2158.6530883808
NZO/HlLtJ f 679.8914893617 125.4702197267 926.1630255812 433.6199531421
NZO/HlLtJ m 636.4891304348 126.8266939566 885.4231390177 387.5551218519
PWK/PhJ f 1811.2270833333 124.1563592309 2054.9197889476 1567.5343777191
PWK/PhJ m 1804.6058680851 125.4702197267 2050.8774043046 1558.3343318656
WSB/EiJ f 2545.7272727273 115.9867134866 2773.384689552 2318.0698559026
WSB/EiJ m 2454.8846153846 119.2855715208 2689.0169936593 2220.75223711


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 416.5545031463 87.342737661 587.9898463555 245.119159937
A/J both 472.7723929981 78.5342845298 626.9186034629 318.6261825332
C57BL/6J both 1469.3592247847 78.5342845298 1623.5054352495 1315.2130143198
C57BL/6NJ both 1122.7192307692 168.6952730402 1453.8324155159 791.6060460225
CAST/EiJ both 2356.6487878787 108.4956358212 2569.6028017077 2143.6947740498
DBA/2J both 1151.3743333333 122.9085249554 1392.6178038651 910.1308628016
NOD/ShiLtJ both 2341.8462282399 90.2204566189 2518.9299258563 2164.7625306234
NZO/HlLtJ both 658.1903098982 89.2017185068 833.2744398052 483.1061799913
PWK/PhJ both 1807.9164757092 88.2575458187 1981.1473940823 1634.6855573361
WSB/EiJ both 2500.3059440559 83.1894904397 2663.5893403275 2337.0225477844




  GWAS USING LINEAR MIXED MODELS