Project measure / variable:   CSNA03   amb_dist_OFT_in_bin1

ID, description, units MPD:90019   amb_dist_OFT_in_bin1   distance traveled in successive 5 min intervals, 60 min test (OFT), founders   [cm]  0-5 min  
Data set, strains CSNA03   inbred w/CC8   10 strains     sex: both     age: 4-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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CSNA03 - distance traveled in successive 5 min intervals, 60 min test (OFT), founders 0-5 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1702.0   cm 1663.0   cm
Median of the strain means1604.0   cm 1852.0   cm
SD of the strain means± 1062.0 ± 999.0
Coefficient of variation (CV)0.6237 0.6009
Min–max range of strain means333.9   –   3183.0   cm 477.9   –   3517.0   cm
Mean sample size per strain43.5   mice 42.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2047070.2996 2047070.2996 3.4034 0.0654
strain 9 852882470.8296 94764718.9811 157.551 < 0.0001
sex:strain 9 16671383.7343 1852375.9705 3.0797 0.0012
Residuals 841 505849625.4122 601485.8804


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 333.9 636.1   48 91.81 1.9053 30.968, 3737.0 -1.29
129S1/SvImJ m 477.9 491.8   49 70.26 1.0291 41.475, 1926.0 -1.19
A/J f 630.4 810.8   59 105.6 1.2861 46.306, 3176.0 -1.01
A/J m 599.4 759.9   61 97.29 1.2678 22.843, 3440.0 -1.06
C57BL/6J f 2159.0 440.8   61 56.44 0.2042 1080.0, 3307.0 0.43
C57BL/6J m 1948.0 474.0   59 61.7 0.2433 838.3, 3457.0 0.29
C57BL/6NJ f 1300.0 410.3   13 113.8 0.3156 643.4, 1925.0 -0.38
C57BL/6NJ m 1834.0 1328.0   13 368.3 0.7241 1029.0, 5470.0 0.17
CAST/EiJ f 3099.0 1980.0   33 344.7 0.6389 57.42, 10003.0 1.32
CAST/EiJ m 2289.0 867.9   30 158.5 0.3791 1048.0, 5126.0 0.63
DBA/2J f 937.8 504.3   24 102.9 0.5377 0.2, 1938.0 -0.72
DBA/2J m 861.7 366.5   25 73.31 0.4254 148.5, 1719.0 -0.8
NOD/ShiLtJ f 3183.0 808.7   47 118.0 0.2541 1968.0, 6329.0 1.4
NOD/ShiLtJ m 3517.0 1106.0   44 166.7 0.3144 1979.0, 8938.0 1.86
NZO/HlLtJ f 740.8 411.8   47 60.07 0.5559 145.9, 3086.0 -0.91
NZO/HlLtJ m 660.8 229.9   46 33.897 0.3479 54.84, 1073.0 -1.0
PWK/PhJ f 1907.0 701.0   48 101.2 0.3677 407.7, 5051.0 0.19
PWK/PhJ m 1871.0 701.9   47 102.4 0.3752 22.75, 5219.0 0.21
WSB/EiJ f 2730.0 749.1   55 101.0 0.2744 1780.0, 5410.0 0.97
WSB/EiJ m 2567.0 758.4   52 105.2 0.2954 1673.0, 5765.0 0.91


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 333.8645833334 111.9417520033 553.5825952488 114.1465714179
129S1/SvImJ m 477.8922040816 110.7936011188 695.3566383534 260.4277698098
A/J f 630.4445084746 100.9686879131 828.6247135989 432.2643033502
A/J m 599.3609508197 99.2996690265 794.2652244434 404.4566771959
C57BL/6J f 2158.6229508197 99.2996690265 2353.5272244434 1963.7186771959
C57BL/6J m 1947.9203389831 100.9686879131 2146.1005441074 1749.7401338587
C57BL/6NJ f 1300.1 215.1003129839 1722.296475269 877.903524731
C57BL/6NJ m 1833.6923076923 215.1003129839 2255.8887829613 1411.4958324233
CAST/EiJ f 3099.1218181818 135.0068326436 3364.1117109841 2834.1319253794
CAST/EiJ m 2289.1666666666 141.59636064 2567.0904109134 2011.2429224198
DBA/2J f 937.7583333333 158.3095438788 1248.4865256819 627.0301409848
DBA/2J m 861.66 155.1110415664 1166.1102079805 557.2097920195
NOD/ShiLtJ f 3183.2340425532 113.1263537965 3405.2771775463 2961.1909075602
NOD/ShiLtJ m 3516.9090909091 116.9193467538 3746.3970698221 3287.4211119961
NZO/HlLtJ f 740.844680851 113.1263537965 962.8878158441 518.801545858
NZO/HlLtJ m 660.7965217391 114.3493769488 885.2401928212 436.3528506571
PWK/PhJ f 1906.6958333333 111.9417520033 2126.4138452488 1686.9778214178
PWK/PhJ m 1871.0840425532 113.1263537965 2093.1271775462 1649.0409075601
WSB/EiJ f 2729.6909090909 104.5758428906 2934.9511974383 2524.4306207435
WSB/EiJ m 2567.3653846154 107.5501564919 2778.4636222499 2356.2671469809


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 405.8783937075 78.7498855403 560.447783411 251.309004004
A/J both 614.9027296471 70.8080154496 753.8839060524 475.9215532419
C57BL/6J both 2053.2716449014 70.8080154496 2192.2528213066 1914.2904684961
C57BL/6NJ both 1566.8961538462 152.0988899463 1865.434144502 1268.3581631904
CAST/EiJ both 2694.1442424242 97.8217437574 2886.1476609508 2502.1408238976
DBA/2J both 899.7091666667 110.8166807152 1117.2189013106 682.1994320227
NOD/ShiLtJ both 3350.0715667312 81.3444920825 3509.7336209763 3190.409512486
NZO/HlLtJ both 700.8206012951 80.4259782842 858.6798069867 542.9613956035
PWK/PhJ both 1888.8899379433 79.5746941007 2045.0782526131 1732.7016232734
WSB/EiJ both 2648.5281468531 75.0052382799 2795.747585027 2501.3087086793




  GWAS USING LINEAR MIXED MODELS