Project measure / variable:   JaxCC1   pip_24

ID, description, units MPD:89050   pip_24   auditory brainstem response (ABR) threshold, sound pressure level   [dB]  24 kHz pip  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 15-17wks
Procedure ABR test
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  STRAIN COMPARISON PLOT
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JaxCC1 - auditory brainstem response (ABR) threshold, sound pressure level 24 kHz pip



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means52.55   dB 57.45   dB
Median of the strain means50.0   dB 55.0   dB
SD of the strain means± 18.698 ± 20.48
Coefficient of variation (CV)0.3558 0.3565
Min–max range of strain means27.5   –   95.0   dB 27.5   –   97.5   dB
Mean sample size per strain3.2   mice 3.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 346.8822 346.8822 1.9951 0.1618
strain 16 36918.6409 2307.4151 13.2714 < 0.0001
sex:strain 16 3757.7876 234.8617 1.3508 0.1897
Residuals 77 13387.5 173.8636


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 50.0 4.0825   4 2.0412 0.0816 45.0, 55.0 -0.14
CC002/UncJ m 53.33 10.408   3 6.0093 0.1952 45.0, 65.0 -0.2
CC003/UncJ f 50.0 4.0825   4 2.0412 0.0816 45.0, 55.0 -0.14
CC003/UncJ m 63.33 16.073   3 9.2796 0.2538 45.0, 75.0 0.29
CC004/TauUncJ f 63.75 4.7871   4 2.3936 0.0751 60.0, 70.0 0.6
CC004/TauUncJ m 62.5 2.8868   4 1.4434 0.0462 60.0, 65.0 0.25
CC006/TauUncJ f 70.0 42.426   2   30.0 0.6061 40.0, 100.0 0.93
CC006/TauUncJ m 75.0 33.166   4 16.583 0.4422 30.0, 100.0 0.86
CC009/UncJ f 62.5 6.455   4 3.2275 0.1033 55.0, 70.0 0.53
CC009/UncJ m 76.25 29.262   4 14.631 0.3838 40.0, 100.0 0.92
CC010/GeniUncJ f 50.0 7.0711   2   5.0 0.1414 45.0, 55.0 -0.14
CC013/GeniUncJ f 76.67 7.6376   3 4.4096 0.0996 70.0, 85.0 1.29
CC013/GeniUncJ m 70.0 7.0711   2   5.0 0.101 65.0, 75.0 0.61
CC017/UncJ f 28.333 5.7735   3 3.3333 0.2038 25.0, 35.0 -1.29
CC017/UncJ m 27.5 3.5355   2   2.5 0.1286 25.0, 30.0 -1.46
CC018/UncJ f 51.67 11.547   3 6.6667 0.2235 45.0, 65.0 -0.05
CC018/UncJ m 50.0 0.0   2   0.0 0.0 50.0, 50.0 -0.36
CC019/TauUncJ f 31.667 2.8868   3 1.6667 0.0912 30.0, 35.0 -1.12
CC019/TauUncJ m 35.0 8.165   4 4.0825 0.2333 25.0, 45.0 -1.1
CC024/GeniUncJ f 35.0 5.0   3 2.8868 0.1429 30.0, 40.0 -0.94
CC024/GeniUncJ m 35.0 7.0711   4 3.5355 0.202 30.0, 45.0 -1.1
CC025/GeniUncJ f 27.5 17.678   2   12.5 0.6428 15.0, 40.0 -1.34
CC025/GeniUncJ m 68.75 7.5   4 3.75 0.1091 60.0, 75.0 0.55
CC026/GeniUncJ f 30.0 5.0   3 2.8868 0.1667 25.0, 35.0 -1.21
CC026/GeniUncJ m 37.5 6.455   4 3.2275 0.1721 30.0, 45.0 -0.97
CC032/GeniUncJ f 95.0 10.0   4 5.0 0.1053 80.0, 100.0 2.27
CC032/GeniUncJ m 97.5 5.0   4 2.5 0.0513 90.0, 100.0 1.96
CC040/TauUncJ f 68.75 21.747   4 10.873 0.3163 50.0, 100.0 0.87
CC040/TauUncJ m 90.0 14.142   2   10.0 0.1571 80.0, 100.0 1.59
CC041/TauUncJ f 65.0 10.801   4 5.4006 0.1662 55.0, 80.0 0.67
CC041/TauUncJ m 55.0 0.0   4 0.0 0.0 55.0, 55.0 -0.12
CC051/TauUncJ f 47.5 15.0   4 7.5 0.3158 25.0, 55.0 -0.27
CC051/TauUncJ m 35.0 0.0   3 0.0 0.0 35.0, 35.0 -1.1
CC068/TauUncJ f 42.5 3.5355   2   2.5 0.0832 40.0, 45.0 -0.54
CC068/TauUncJ m 45.0 7.0711   2   5.0 0.1571 40.0, 50.0 -0.61


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 50.0 6.5929 63.1281 36.8719
CC002/UncJ m 53.3333 7.6128 68.4923 38.1743
CC003/UncJ f 50.0 6.5929 63.1281 36.8719
CC003/UncJ m 63.3333 7.6128 78.4923 48.1743
CC004/TauUncJ f 63.75 6.5929 76.8781 50.6219
CC004/TauUncJ m 62.5 6.5929 75.6281 49.3719
CC006/TauUncJ f 70.0 9.3237 88.5659 51.4341
CC006/TauUncJ m 75.0 6.5929 88.1281 61.8719
CC009/UncJ f 62.5 6.5929 75.6281 49.3719
CC009/UncJ m 76.25 6.5929 89.3781 63.1219
CC013/GeniUncJ f 76.6667 7.6128 91.8257 61.5077
CC013/GeniUncJ m 70.0 9.3237 88.5659 51.4341
CC017/UncJ f 28.3333 7.6128 43.4923 13.1743
CC017/UncJ m 27.5 9.3237 46.0659 8.9341
CC018/UncJ f 51.6667 7.6128 66.8257 36.5077
CC018/UncJ m 50.0 9.3237 68.5659 31.4341
CC019/TauUncJ f 31.6667 7.6128 46.8257 16.5077
CC019/TauUncJ m 35.0 6.5929 48.1281 21.8719
CC024/GeniUncJ f 35.0 7.6128 50.159 19.841
CC024/GeniUncJ m 35.0 6.5929 48.1281 21.8719
CC025/GeniUncJ f 27.5 9.3237 46.0659 8.9341
CC025/GeniUncJ m 68.75 6.5929 81.8781 55.6219
CC026/GeniUncJ f 30.0 7.6128 45.159 14.841
CC026/GeniUncJ m 37.5 6.5929 50.6281 24.3719
CC032/GeniUncJ f 95.0 6.5929 108.1281 81.8719
CC032/GeniUncJ m 97.5 6.5929 110.6281 84.3719
CC040/TauUncJ f 68.75 6.5929 81.8781 55.6219
CC040/TauUncJ m 90.0 9.3237 108.5659 71.4341
CC041/TauUncJ f 65.0 6.5929 78.1281 51.8719
CC041/TauUncJ m 55.0 6.5929 68.1281 41.8719
CC051/TauUncJ f 47.5 6.5929 60.6281 34.3719
CC051/TauUncJ m 35.0 7.6128 50.159 19.841
CC068/TauUncJ f 42.5 9.3237 61.0659 23.9341
CC068/TauUncJ m 45.0 9.3237 63.5659 26.4341


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 51.6667 5.0354 61.6934 41.6399
CC003/UncJ both 56.6667 5.0354 66.6934 46.6399
CC004/TauUncJ both 63.125 4.6619 72.408 53.842
CC006/TauUncJ both 72.5 5.7096 83.8692 61.1308
CC009/UncJ both 69.375 4.6619 78.658 60.092
CC013/GeniUncJ both 73.3333 6.0184 85.3176 61.3491
CC017/UncJ both 27.9167 6.0184 39.9009 15.9324
CC018/UncJ both 50.8333 6.0184 62.8176 38.8491
CC019/TauUncJ both 33.3333 5.0354 43.3601 23.3066
CC024/GeniUncJ both 35.0 5.0354 45.0267 24.9733
CC025/GeniUncJ both 48.125 5.7096 59.4942 36.7558
CC026/GeniUncJ both 33.75 5.0354 43.7767 23.7233
CC032/GeniUncJ both 96.25 4.6619 105.533 86.967
CC040/TauUncJ both 79.375 5.7096 90.7442 68.0058
CC041/TauUncJ both 60.0 4.6619 69.283 50.717
CC051/TauUncJ both 41.25 5.0354 51.2767 31.2233
CC068/TauUncJ both 43.75 6.5929 56.8781 30.6219




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA