Project measure / variable:   JaxCC1   pip_18

ID, description, units MPD:89049   pip_18   auditory brainstem response (ABR) threshold, sound pressure level   [dB]  18 kHz pip  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 15-17wks
Procedure ABR test
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  STRAIN COMPARISON PLOT
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JaxCC1 - auditory brainstem response (ABR) threshold, sound pressure level 18 kHz pip



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means49.444   dB 51.64   dB
Median of the strain means43.959   dB 45.0   dB
SD of the strain means± 18.911 ± 21.458
Coefficient of variation (CV)0.3825 0.4155
Min–max range of strain means28.333   –   97.5   dB 25.0   –   100.0   dB
Mean sample size per strain3.2   mice 3.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 60.4219 60.4219 0.3368 0.5634
strain 16 40417.9681 2526.123 14.0802 < 0.0001
sex:strain 16 3059.7294 191.2331 1.0659 0.4015
Residuals 77 13814.5833 179.4102


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 38.75 2.5   4 1.25 0.0645 35.0, 40.0 -0.57
CC002/UncJ m 45.0 13.229   3 7.6376 0.294 35.0, 60.0 -0.31
CC003/UncJ f 36.25 10.308   4 5.1539 0.2844 25.0, 50.0 -0.7
CC003/UncJ m 45.0 15.0   3 8.6603 0.3333 30.0, 60.0 -0.31
CC004/TauUncJ f 53.75 7.5   4 3.75 0.1395 45.0, 60.0 0.23
CC004/TauUncJ m 50.0 4.0825   4 2.0412 0.0816 45.0, 55.0 -0.08
CC006/TauUncJ f 57.5 17.678   2   12.5 0.3074 45.0, 70.0 0.43
CC006/TauUncJ m 77.5 30.687   4 15.343 0.396 35.0, 100.0 1.21
CC009/UncJ f 61.25 17.97   4 8.9849 0.2934 35.0, 75.0 0.62
CC009/UncJ m 67.5 29.861   4 14.93 0.4424 30.0, 100.0 0.74
CC010/GeniUncJ f 37.5 3.5355   2   2.5 0.0943 35.0, 40.0 -0.63
CC013/GeniUncJ f 78.33 2.8868   3 1.6667 0.0369 75.0, 80.0 1.53
CC013/GeniUncJ m 65.0 7.0711   2   5.0 0.1088 60.0, 70.0 0.62
CC017/UncJ f 28.333 5.7735   3 3.3333 0.2038 25.0, 35.0 -1.12
CC017/UncJ m 25.0 7.0711   2   5.0 0.2828 20.0, 30.0 -1.24
CC018/UncJ f 46.667 16.073   3 9.2796 0.3444 35.0, 65.0 -0.15
CC018/UncJ m 35.0 7.0711   2   5.0 0.202 30.0, 40.0 -0.78
CC019/TauUncJ f 31.667 2.8868   3 1.6667 0.0912 30.0, 35.0 -0.94
CC019/TauUncJ m 35.0 8.165   4 4.0825 0.2333 25.0, 45.0 -0.78
CC024/GeniUncJ f 35.0 5.0   3 2.8868 0.1429 30.0, 40.0 -0.76
CC024/GeniUncJ m 40.0 17.321   4 8.6603 0.433 25.0, 65.0 -0.54
CC025/GeniUncJ f 32.5 3.5355   2   2.5 0.1088 30.0, 35.0 -0.9
CC025/GeniUncJ m 51.25 15.478   4 7.7392 0.302 30.0, 65.0 -0.02
CC026/GeniUncJ f 30.0 0.0   3 0.0 0.0 30.0, 30.0 -1.03
CC026/GeniUncJ m 37.5 5.0   4 2.5 0.1333 30.0, 40.0 -0.66
CC032/GeniUncJ f 97.5 5.0   4 2.5 0.0513 90.0, 100.0 2.54
CC032/GeniUncJ m 100.0 0.0   4 0.0 0.0 100.0, 100.0 2.25
CC040/TauUncJ f 71.25 20.966   4 10.483 0.2943 50.0, 100.0 1.15
CC040/TauUncJ m 90.0 14.142   2   10.0 0.1571 80.0, 100.0 1.79
CC041/TauUncJ f 55.0 8.165   4 4.0825 0.1485 45.0, 65.0 0.29
CC041/TauUncJ m 50.0 4.0825   4 2.0412 0.0816 45.0, 55.0 -0.08
CC051/TauUncJ f 41.25 16.008   4 8.0039 0.3881 30.0, 65.0 -0.43
CC051/TauUncJ m 31.667 2.8868   3 1.6667 0.0912 30.0, 35.0 -0.93
CC068/TauUncJ f 57.5 17.678   2   12.5 0.3074 45.0, 70.0 0.43
CC068/TauUncJ m 32.5 3.5355   2   2.5 0.1088 30.0, 35.0 -0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 38.75 6.6972 52.0858 25.4142
CC002/UncJ m 45.0 7.7333 60.3989 29.6011
CC003/UncJ f 36.25 6.6972 49.5858 22.9142
CC003/UncJ m 45.0 7.7333 60.3989 29.6011
CC004/TauUncJ f 53.75 6.6972 67.0858 40.4142
CC004/TauUncJ m 50.0 6.6972 63.3358 36.6642
CC006/TauUncJ f 57.5 9.4713 76.3597 38.6403
CC006/TauUncJ m 77.5 6.6972 90.8358 64.1642
CC009/UncJ f 61.25 6.6972 74.5858 47.9142
CC009/UncJ m 67.5 6.6972 80.8358 54.1642
CC013/GeniUncJ f 78.3333 7.7333 93.7322 62.9344
CC013/GeniUncJ m 65.0 9.4713 83.8597 46.1403
CC017/UncJ f 28.3333 7.7333 43.7322 12.9344
CC017/UncJ m 25.0 9.4713 43.8597 6.1403
CC018/UncJ f 46.6667 7.7333 62.0656 31.2678
CC018/UncJ m 35.0 9.4713 53.8597 16.1403
CC019/TauUncJ f 31.6667 7.7333 47.0656 16.2678
CC019/TauUncJ m 35.0 6.6972 48.3358 21.6642
CC024/GeniUncJ f 35.0 7.7333 50.3989 19.6011
CC024/GeniUncJ m 40.0 6.6972 53.3358 26.6642
CC025/GeniUncJ f 32.5 9.4713 51.3597 13.6403
CC025/GeniUncJ m 51.25 6.6972 64.5858 37.9142
CC026/GeniUncJ f 30.0 7.7333 45.3989 14.6011
CC026/GeniUncJ m 37.5 6.6972 50.8358 24.1642
CC032/GeniUncJ f 97.5 6.6972 110.8358 84.1642
CC032/GeniUncJ m 100.0 6.6972 113.3358 86.6642
CC040/TauUncJ f 71.25 6.6972 84.5858 57.9142
CC040/TauUncJ m 90.0 9.4713 108.8597 71.1403
CC041/TauUncJ f 55.0 6.6972 68.3358 41.6642
CC041/TauUncJ m 50.0 6.6972 63.3358 36.6642
CC051/TauUncJ f 41.25 6.6972 54.5858 27.9142
CC051/TauUncJ m 31.6667 7.7333 47.0656 16.2678
CC068/TauUncJ f 57.5 9.4713 76.3597 38.6403
CC068/TauUncJ m 32.5 9.4713 51.3597 13.6403


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 41.875 5.1151 52.0604 31.6896
CC003/UncJ both 40.625 5.1151 50.8104 30.4396
CC004/TauUncJ both 51.875 4.7356 61.3049 42.4451
CC006/TauUncJ both 67.5 5.7999 79.0492 55.9508
CC009/UncJ both 64.375 4.7356 73.8049 54.9451
CC013/GeniUncJ both 71.6667 6.1137 83.8406 59.4928
CC017/UncJ both 26.6667 6.1137 38.8406 14.4928
CC018/UncJ both 40.8333 6.1137 53.0072 28.6594
CC019/TauUncJ both 33.3333 5.1151 43.5187 23.1479
CC024/GeniUncJ both 37.5 5.1151 47.6854 27.3146
CC025/GeniUncJ both 41.875 5.7999 53.4242 30.3258
CC026/GeniUncJ both 33.75 5.1151 43.9354 23.5646
CC032/GeniUncJ both 98.75 4.7356 108.1799 89.3201
CC040/TauUncJ both 80.625 5.7999 92.1742 69.0758
CC041/TauUncJ both 52.5 4.7356 61.9299 43.0701
CC051/TauUncJ both 36.4583 5.1151 46.6437 26.2729
CC068/TauUncJ both 45.0 6.6972 58.3358 31.6642




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA