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Project measure / variable:   JaxCC1   center_perm_OF

ID, description, units MPD:89036   center_perm_OF   permanence time in center of arena, 20 min test   [s]  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - permanence time in center of arena, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means155.8   s 134.0   s
Median of the strain means140.8   s 126.0   s
SD of the strain means± 73.08 ± 55.75
Coefficient of variation (CV)0.4689 0.4159
Min–max range of strain means37.7   –   285.1   s 34.975   –   234.1   s
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8153.2462 8153.2462 1.2517 0.2645
strain 16 611441.1887 38215.0743 5.8669 < 0.0001
sex:strain 16 251658.287 15728.6429 2.4147 0.0023
Residuals 215 1400428.711 6513.6219


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 135.1 76.82   8 27.161 0.5688 51.6, 264.0 -0.28
CC002/UncJ m 106.1 47.415   7 17.921 0.447 46.0, 190.7 -0.5
CC003/UncJ f 174.6 104.8   5 46.849 0.6 72.8, 310.8 0.26
CC003/UncJ m 163.8 75.96   4 37.982 0.4637 66.3, 249.2 0.53
CC004/TauUncJ f 154.4 52.03   8 18.396 0.337 112.3, 257.2 -0.02
CC004/TauUncJ m 234.1 51.78   8 18.306 0.2212 147.1, 291.6 1.8
CC006/TauUncJ f 278.8 28.873   4 14.437 0.1036 242.8, 311.4 1.68
CC006/TauUncJ m 113.6 90.57   8 32.022 0.7974 15.3, 246.9 -0.37
CC009/UncJ f 37.7 12.02   8 4.2498 0.3188 22.6, 57.3 -1.62
CC009/UncJ m 79.44 41.559   8 14.693 0.5232 20.1, 134.7 -0.98
CC010/GeniUncJ f 269.5 520.5   5 232.8 1.9314 6.6, 1200.0 1.56
CC013/GeniUncJ f 228.8 68.15   8 24.095 0.2978 136.8, 349.3 1.0
CC013/GeniUncJ m 192.4 129.1   4 64.53 0.6707 66.2, 354.5 1.05
CC017/UncJ f 107.7 77.79   6 31.756 0.7222 8.6, 217.8 -0.66
CC017/UncJ m 129.1 37.034   5 16.562 0.2869 95.8, 189.7 -0.09
CC018/UncJ f 219.9 79.74   8 28.192 0.3627 134.5, 379.7 0.88
CC018/UncJ m 213.7 64.18   8 22.692 0.3003 151.4, 303.1 1.43
CC019/TauUncJ f 120.9 80.26   8 28.375 0.664 25.7, 271.4 -0.48
CC019/TauUncJ m 64.61 36.149   8 12.781 0.5595 23.9, 109.8 -1.25
CC024/GeniUncJ f 99.59 89.63   7 33.878 0.9001 17.2, 262.2 -0.77
CC024/GeniUncJ m 95.76 60.83   8 21.507 0.6352 24.7, 179.5 -0.69
CC025/GeniUncJ f 74.82 55.21   6 22.54 0.7379 21.2, 174.2 -1.11
CC025/GeniUncJ m 194.7 153.6   10 48.585 0.7892 24.2, 428.8 1.09
CC026/GeniUncJ f 146.6 56.38   8 19.932 0.3847 68.8, 225.0 -0.13
CC026/GeniUncJ m 174.5 46.824   8 16.555 0.2683 96.0, 244.5 0.73
CC032/GeniUncJ f 108.8 81.62   8 28.858 0.7506 33.1, 281.0 -0.64
CC032/GeniUncJ m 126.0 58.78   8 20.781 0.4666 54.5, 218.0 -0.14
CC040/TauUncJ f 160.6 80.02   8 28.291 0.4981 48.9, 308.6 0.07
CC040/TauUncJ m 117.6 60.21   8 21.288 0.512 73.5, 261.3 -0.29
CC041/TauUncJ f 88.38 38.178   8 13.498 0.432 53.3, 147.6 -0.92
CC041/TauUncJ m 34.975 31.377   8 11.093 0.8971 5.9, 96.4 -1.78
CC051/TauUncJ f 114.0 69.4   8 24.536 0.6086 22.6, 215.0 -0.57
CC051/TauUncJ m 82.5 69.93   10 22.115 0.8477 15.5, 233.2 -0.92
CC068/TauUncJ f 285.1 253.6   5 113.4 0.8894 38.7, 617.3 1.77
CC068/TauUncJ m 155.5 116.7   8 41.275 0.7506 11.0, 313.2 0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 135.05 28.5342 191.2927 78.8073
CC002/UncJ m 106.0857 30.5044 166.2117 45.9598
CC003/UncJ f 174.6 36.0933 245.742 103.458
CC003/UncJ m 163.825 40.3535 243.3641 84.2859
CC004/TauUncJ f 154.3875 28.5342 210.6302 98.1448
CC004/TauUncJ m 234.0625 28.5342 290.3052 177.8198
CC006/TauUncJ f 278.825 40.3535 358.3641 199.2859
CC006/TauUncJ m 113.5875 28.5342 169.8302 57.3448
CC009/UncJ f 37.7 28.5342 93.9427 -18.5427
CC009/UncJ m 79.4375 28.5342 135.6802 23.1948
CC013/GeniUncJ f 228.8375 28.5342 285.0802 172.5948
CC013/GeniUncJ m 192.425 40.3535 271.9641 112.8859
CC017/UncJ f 107.7 32.9485 172.6434 42.7566
CC017/UncJ m 129.1 36.0933 200.242 57.958
CC018/UncJ f 219.875 28.5342 276.1177 163.6323
CC018/UncJ m 213.7375 28.5342 269.9802 157.4948
CC019/TauUncJ f 120.8625 28.5342 177.1052 64.6198
CC019/TauUncJ m 64.6125 28.5342 120.8552 8.3698
CC024/GeniUncJ f 99.5857 30.5044 159.7117 39.4598
CC024/GeniUncJ m 95.7625 28.5342 152.0052 39.5198
CC025/GeniUncJ f 74.8167 32.9485 139.7601 9.8732
CC025/GeniUncJ m 194.68 25.5218 244.985 144.375
CC026/GeniUncJ f 146.55 28.5342 202.7927 90.3073
CC026/GeniUncJ m 174.55 28.5342 230.7927 118.3073
CC032/GeniUncJ f 108.75 28.5342 164.9927 52.5073
CC032/GeniUncJ m 125.975 28.5342 182.2177 69.7323
CC040/TauUncJ f 160.6375 28.5342 216.8802 104.3948
CC040/TauUncJ m 117.6 28.5342 173.8427 61.3573
CC041/TauUncJ f 88.375 28.5342 144.6177 32.1323
CC041/TauUncJ m 34.975 28.5342 91.2177 -21.2677
CC051/TauUncJ f 114.0375 28.5342 170.2802 57.7948
CC051/TauUncJ m 82.5 25.5218 132.805 32.195
CC068/TauUncJ f 285.14 36.0933 356.282 213.998
CC068/TauUncJ m 155.5375 28.5342 211.7802 99.2948


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 120.5679 20.8849 161.7333 79.4024
CC003/UncJ both 169.2125 27.07 222.569 115.856
CC004/TauUncJ both 194.225 20.1768 233.9946 154.4554
CC006/TauUncJ both 196.2063 24.7114 244.9138 147.4987
CC009/UncJ both 58.5687 20.1768 98.3383 18.7992
CC013/GeniUncJ both 210.6312 24.7114 259.3388 161.9237
CC017/UncJ both 118.4 24.4353 166.5633 70.2367
CC018/UncJ both 216.8062 20.1768 256.5758 177.0367
CC019/TauUncJ both 92.7375 20.1768 132.5071 52.9679
CC024/GeniUncJ both 97.6741 20.8849 138.8395 56.5087
CC025/GeniUncJ both 134.7483 20.8385 175.8222 93.6745
CC026/GeniUncJ both 160.55 20.1768 200.3196 120.7804
CC032/GeniUncJ both 117.3625 20.1768 157.1321 77.5929
CC040/TauUncJ both 139.1187 20.1768 178.8883 99.3492
CC041/TauUncJ both 61.675 20.1768 101.4446 21.9054
CC051/TauUncJ both 98.2687 19.1413 135.9975 60.54
CC068/TauUncJ both 220.3387 23.005 265.683 174.9945




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA