Project measure / variable:   JaxCC1   distance_4

ID, description, units MPD:89012   distance_4   distance traveled   [cm]  4th 5min  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - distance traveled 4th 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means693.9   cm 606.9   cm
Median of the strain means732.3   cm 641.9   cm
SD of the strain means± 370.9 ± 282.9
Coefficient of variation (CV)0.5346 0.4661
Min–max range of strain means144.9   –   1493.0   cm 201.2   –   1096.0   cm
Mean sample size per strain6.9   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1479678.7572 1479678.7572 15.9032 0.0001
strain 16 21115293.1226 1319705.8202 14.1839 < 0.0001
sex:strain 16 3532094.6334 220755.9146 2.3726 0.0028
Residuals 215 20004153.294 93042.5735


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 536.1 169.9   8 60.08 0.317 236.0, 781.0 -0.43
CC002/UncJ m 392.7 224.6   7 84.87 0.5718 148.0, 848.0 -0.76
CC003/UncJ f 1016.0 208.6   5 93.27 0.2052 770.0, 1292.0 0.87
CC003/UncJ m 1096.0 336.9   4 168.5 0.3073 660.0, 1382.0 1.73
CC004/TauUncJ f 1381.0 261.6   8 92.47 0.1894 1074.0, 1934.0 1.85
CC004/TauUncJ m 970.1 283.5   8 100.2 0.2922 564.0, 1355.0 1.28
CC006/TauUncJ f 758.0 232.9   4 116.5 0.3073 494.0, 1060.0 0.17
CC006/TauUncJ m 481.0 302.5   8 107.0 0.629 181.0, 1070.0 -0.45
CC009/UncJ f 543.8 468.2   8 165.5 0.861 55.0, 1302.0 -0.4
CC009/UncJ m 995.1 566.4   8 200.3 0.5692 229.0, 1595.0 1.37
CC010/GeniUncJ f 160.8 148.1   4 74.06 0.9214 21.0, 368.0 -1.44
CC013/GeniUncJ f 792.2 297.5   8 105.2 0.3755 223.0, 1097.0 0.27
CC013/GeniUncJ m 774.5 427.7   4 213.9 0.5522 554.0, 1416.0 0.59
CC017/UncJ f 772.3 369.3   6 150.8 0.4781 332.0, 1296.0 0.21
CC017/UncJ m 672.2 264.1   5 118.1 0.3929 384.0, 997.0 0.23
CC018/UncJ f 928.0 195.2   8 69.01 0.2103 697.0, 1220.0 0.63
CC018/UncJ m 830.4 194.4   8 68.72 0.2341 585.0, 1068.0 0.79
CC019/TauUncJ f 744.6 343.3   8 121.4 0.461 189.0, 1293.0 0.14
CC019/TauUncJ m 641.9 761.3   8 269.2 1.1861 143.0, 2488.0 0.12
CC024/GeniUncJ f 144.9 71.64   7 27.077 0.4945 73.0, 286.0 -1.48
CC024/GeniUncJ m 201.2 134.1   8 47.403 0.6662 3.0, 387.0 -1.43
CC025/GeniUncJ f 720.0 440.3   6 179.8 0.6115 255.0, 1380.0 0.07
CC025/GeniUncJ m 286.6 222.4   10 70.31 0.7758 2.0, 723.0 -1.13
CC026/GeniUncJ f 1493.0 293.5   8 103.8 0.1966 1104.0, 1773.0 2.15
CC026/GeniUncJ m 893.0 189.8   8 67.11 0.2126 675.0, 1282.0 1.01
CC032/GeniUncJ f 643.2 289.9   8 102.5 0.4507 320.0, 1262.0 -0.14
CC032/GeniUncJ m 470.9 295.0   8 104.3 0.6265 259.0, 1174.0 -0.48
CC040/TauUncJ f 823.8 194.8   8 68.86 0.2365 523.0, 1116.0 0.35
CC040/TauUncJ m 643.8 231.0   8 81.68 0.3589 279.0, 960.0 0.13
CC041/TauUncJ f 235.2 203.4   8 71.93 0.8648 2.0, 590.0 -1.24
CC041/TauUncJ m 336.5 217.5   8 76.91 0.6465 137.0, 701.0 -0.96
CC051/TauUncJ f 464.1 297.2   8 105.1 0.6403 5.0, 826.0 -0.62
CC051/TauUncJ m 282.7 94.68   10 29.94 0.3349 121.0, 425.0 -1.15
CC068/TauUncJ f 332.4 103.0   5 46.054 0.3098 216.0, 458.0 -0.97
CC068/TauUncJ m 349.4 165.7   8 58.6 0.4744 242.0, 703.0 -0.91


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 536.125 107.844 748.6918 323.5582
CC002/UncJ m 392.7143 115.2901 619.9578 165.4708
CC003/UncJ f 1016.2 136.413 1285.0781 747.3219
CC003/UncJ m 1096.5 152.5144 1397.1149 795.8851
CC004/TauUncJ f 1380.75 107.844 1593.3168 1168.1832
CC004/TauUncJ m 970.125 107.844 1182.6918 757.5582
CC006/TauUncJ f 758.0 152.5144 1058.6149 457.3851
CC006/TauUncJ m 481.0 107.844 693.5668 268.4332
CC009/UncJ f 543.75 107.844 756.3168 331.1832
CC009/UncJ m 995.125 107.844 1207.6918 782.5582
CC013/GeniUncJ f 792.25 107.844 1004.8168 579.6832
CC013/GeniUncJ m 774.5 152.5144 1075.1149 473.8851
CC017/UncJ f 772.3333 124.5275 1017.7844 526.8823
CC017/UncJ m 672.2 136.413 941.0781 403.3219
CC018/UncJ f 928.0 107.844 1140.5668 715.4332
CC018/UncJ m 830.375 107.844 1042.9418 617.8082
CC019/TauUncJ f 744.625 107.844 957.1918 532.0582
CC019/TauUncJ m 641.875 107.844 854.4418 429.3082
CC024/GeniUncJ f 144.8571 115.2901 372.1007 -82.3864
CC024/GeniUncJ m 201.25 107.844 413.8168 -11.3168
CC025/GeniUncJ f 720.0 124.5275 965.451 474.549
CC025/GeniUncJ m 286.6 96.4586 476.7256 96.4744
CC026/GeniUncJ f 1492.75 107.844 1705.3168 1280.1832
CC026/GeniUncJ m 893.0 107.844 1105.5668 680.4332
CC032/GeniUncJ f 643.25 107.844 855.8168 430.6832
CC032/GeniUncJ m 470.875 107.844 683.4418 258.3082
CC040/TauUncJ f 823.75 107.844 1036.3168 611.1832
CC040/TauUncJ m 643.75 107.844 856.3168 431.1832
CC041/TauUncJ f 235.25 107.844 447.8168 22.6832
CC041/TauUncJ m 336.5 107.844 549.0668 123.9332
CC051/TauUncJ f 464.125 107.844 676.6918 251.5582
CC051/TauUncJ m 282.7 96.4586 472.8256 92.5744
CC068/TauUncJ f 332.4 136.413 601.2781 63.5219
CC068/TauUncJ m 349.375 107.844 561.9418 136.8082


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 464.4196 78.9337 620.0026 308.8366
CC003/UncJ both 1056.35 102.3098 1258.0086 854.6914
CC004/TauUncJ both 1175.4375 76.2572 1325.745 1025.13
CC006/TauUncJ both 619.5 93.3956 803.5883 435.4117
CC009/UncJ both 769.4375 76.2572 919.745 619.13
CC013/GeniUncJ both 783.375 93.3956 967.4633 599.2867
CC017/UncJ both 722.2667 92.3521 904.298 540.2353
CC018/UncJ both 879.1875 76.2572 1029.495 728.88
CC019/TauUncJ both 693.25 76.2572 843.5575 542.9425
CC024/GeniUncJ both 173.0536 78.9337 328.6366 17.4706
CC025/GeniUncJ both 503.3 78.7581 658.5369 348.0631
CC026/GeniUncJ both 1192.875 76.2572 1343.1825 1042.5675
CC032/GeniUncJ both 557.0625 76.2572 707.37 406.755
CC040/TauUncJ both 733.75 76.2572 884.0575 583.4425
CC041/TauUncJ both 285.875 76.2572 436.1825 135.5675
CC051/TauUncJ both 373.4125 72.3439 516.0067 230.8183
CC068/TauUncJ both 340.8875 86.9466 512.2644 169.5106




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA