Project measure / variable:   JaxCC1   distance_1

ID, description, units MPD:89009   distance_1   distance traveled   [cm]  1st 5min  
Data set, strains JaxCC1   CC   18 strains     sex: both     age: 7-9wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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JaxCC1 - distance traveled 1st 5min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested18 strains17 strains
Mean of the strain means800.9   cm 791.1   cm
Median of the strain means724.7   cm 693.4   cm
SD of the strain means± 568.8 ± 511.6
Coefficient of variation (CV)0.7102 0.6468
Min–max range of strain means43.4   –   2423.0   cm 177.4   –   1900.0   cm
Mean sample size per strain7.0   mice 7.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 538216.0511 538216.0511 3.5944 0.0593
strain 16 64990229.3883 4061889.3368 27.1265 < 0.0001
sex:strain 16 4600649.3397 287540.5837 1.9203 0.02
Residuals 215 32193893.2048 149739.0382


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
CC002/UncJ f 372.5 199.2   8 70.42 0.5347 185.0, 701.0 -0.75
CC002/UncJ m 709.6 404.7   7 153.0 0.5704 104.0, 1177.0 -0.16
CC003/UncJ f 1001.0 551.5   5 246.7 0.551 303.0, 1642.0 0.35
CC003/UncJ m 1346.0 569.1   4 284.5 0.4226 517.0, 1813.0 1.08
CC004/TauUncJ f 2423.0 530.7   8 187.6 0.2191 1852.0, 3578.0 2.85
CC004/TauUncJ m 1737.0 301.6   8 106.6 0.1737 1280.0, 2121.0 1.85
CC006/TauUncJ f 1167.0 277.9   4 139.0 0.2381 894.0, 1549.0 0.64
CC006/TauUncJ m 763.9 433.5   8 153.3 0.5675 178.0, 1282.0 -0.05
CC009/UncJ f 862.1 341.6   8 120.8 0.3963 388.0, 1519.0 0.11
CC009/UncJ m 1125.0 494.1   8 174.7 0.4392 407.0, 1841.0 0.65
CC010/GeniUncJ f 43.4 25.764   5 11.522 0.5936 17.0, 86.0 -1.33
CC013/GeniUncJ f 1028.0 211.1   8 74.65 0.2055 671.0, 1303.0 0.4
CC013/GeniUncJ m 1105.0 359.9   4 179.9 0.3256 589.0, 1373.0 0.61
CC017/UncJ f 732.0 592.5   6 241.9 0.8094 205.0, 1710.0 -0.12
CC017/UncJ m 478.2 283.1   5 126.6 0.5921 181.0, 894.0 -0.61
CC018/UncJ f 809.0 368.9   8 130.4 0.456 228.0, 1302.0 0.01
CC018/UncJ m 996.5 469.0   8 165.8 0.4707 76.0, 1563.0 0.4
CC019/TauUncJ f 695.9 275.2   8 97.29 0.3955 106.0, 1067.0 -0.18
CC019/TauUncJ m 516.6 226.0   8 79.9 0.4374 166.0, 777.0 -0.54
CC024/GeniUncJ f 464.1 104.9   7 39.637 0.2259 298.0, 608.0 -0.59
CC024/GeniUncJ m 407.0 416.2   8 147.1 1.0226 166.0, 1412.0 -0.75
CC025/GeniUncJ f 643.8 550.5   6 224.7 0.8551 47.0, 1445.0 -0.28
CC025/GeniUncJ m 177.4 242.1   10 76.57 1.3649 11.0, 799.0 -1.2
CC026/GeniUncJ f 1794.0 494.9   8 175.0 0.2759 1047.0, 2422.0 1.75
CC026/GeniUncJ m 1900.0 479.0   8 169.3 0.252 1223.0, 2544.0 2.17
CC032/GeniUncJ f 332.9 123.0   8 43.476 0.3694 132.0, 480.0 -0.82
CC032/GeniUncJ m 427.2 156.7   8 55.39 0.3667 217.0, 741.0 -0.71
CC040/TauUncJ f 738.2 690.4   8 244.1 0.9353 118.0, 1738.0 -0.11
CC040/TauUncJ m 592.8 408.3   8 144.4 0.6889 123.0, 1315.0 -0.39
CC041/TauUncJ f 332.6 275.6   8 97.45 0.8286 31.0, 635.0 -0.82
CC041/TauUncJ m 206.1 233.4   8 82.52 1.1324 38.0, 609.0 -1.14
CC051/TauUncJ f 717.4 402.9   8 142.5 0.5617 48.0, 1472.0 -0.15
CC051/TauUncJ m 693.4 413.4   10 130.7 0.5961 242.0, 1748.0 -0.19
CC068/TauUncJ f 259.4 196.4   5 87.84 0.7572 24.0, 463.0 -0.95
CC068/TauUncJ m 266.4 325.5   8 115.1 1.2218 60.0, 915.0 -1.03


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ f 372.5 136.8115 642.1635 102.8365
CC002/UncJ m 709.5714 146.2576 997.8538 421.289
CC003/UncJ f 1001.0 173.0543 1342.1004 659.8996
CC003/UncJ m 1346.5 193.4806 1727.8618 965.1382
CC004/TauUncJ f 2422.75 136.8115 2692.4135 2153.0865
CC004/TauUncJ m 1736.625 136.8115 2006.2885 1466.9615
CC006/TauUncJ f 1167.25 193.4806 1548.6118 785.8882
CC006/TauUncJ m 763.875 136.8115 1033.5385 494.2115
CC009/UncJ f 862.125 136.8115 1131.7885 592.4615
CC009/UncJ m 1124.875 136.8115 1394.5385 855.2115
CC013/GeniUncJ f 1027.625 136.8115 1297.2885 757.9615
CC013/GeniUncJ m 1105.25 193.4806 1486.6118 723.8882
CC017/UncJ f 732.0 157.9763 1043.3806 420.6194
CC017/UncJ m 478.2 173.0543 819.3004 137.0996
CC018/UncJ f 809.0 136.8115 1078.6635 539.3365
CC018/UncJ m 996.5 136.8115 1266.1635 726.8365
CC019/TauUncJ f 695.875 136.8115 965.5385 426.2115
CC019/TauUncJ m 516.625 136.8115 786.2885 246.9615
CC024/GeniUncJ f 464.1429 146.2576 752.4253 175.8604
CC024/GeniUncJ m 407.0 136.8115 676.6635 137.3365
CC025/GeniUncJ f 643.8333 157.9763 955.2139 332.4527
CC025/GeniUncJ m 177.4 122.3679 418.5944 -63.7944
CC026/GeniUncJ f 1793.5 136.8115 2063.1635 1523.8365
CC026/GeniUncJ m 1900.5 136.8115 2170.1635 1630.8365
CC032/GeniUncJ f 332.875 136.8115 602.5385 63.2115
CC032/GeniUncJ m 427.25 136.8115 696.9135 157.5865
CC040/TauUncJ f 738.25 136.8115 1007.9135 468.5865
CC040/TauUncJ m 592.75 136.8115 862.4135 323.0865
CC041/TauUncJ f 332.625 136.8115 602.2885 62.9615
CC041/TauUncJ m 206.125 136.8115 475.7885 -63.5385
CC051/TauUncJ f 717.375 136.8115 987.0385 447.7115
CC051/TauUncJ m 693.4 122.3679 934.5944 452.2056
CC068/TauUncJ f 259.4 173.0543 600.5004 -81.7004
CC068/TauUncJ m 266.375 136.8115 536.0385 -3.2885


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
CC002/UncJ both 541.0357 100.1357 738.4092 343.6622
CC003/UncJ both 1173.75 129.7908 1429.5753 917.9247
CC004/TauUncJ both 2079.6875 96.7403 2270.3684 1889.0066
CC006/TauUncJ both 965.5625 118.4822 1199.0979 732.0271
CC009/UncJ both 993.5 96.7403 1184.1809 802.8191
CC013/GeniUncJ both 1066.4375 118.4822 1299.9729 832.9021
CC017/UncJ both 605.1 117.1583 836.026 374.174
CC018/UncJ both 902.75 96.7403 1093.4309 712.0691
CC019/TauUncJ both 606.25 96.7403 796.9309 415.5691
CC024/GeniUncJ both 435.5714 100.1357 632.9449 238.198
CC025/GeniUncJ both 410.6167 99.913 607.551 213.6823
CC026/GeniUncJ both 1847.0 96.7403 2037.6809 1656.3191
CC032/GeniUncJ both 380.0625 96.7403 570.7434 189.3816
CC040/TauUncJ both 665.5 96.7403 856.1809 474.8191
CC041/TauUncJ both 269.375 96.7403 460.0559 78.6941
CC051/TauUncJ both 705.3875 91.7759 886.2833 524.4917
CC068/TauUncJ both 262.8875 110.3009 480.2972 45.4778




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA