Project measure / variable:   Peters2   MCH

ID, description, units MPD:6506   MCH   mean RBC corpuscular hemoglobin (MCH)   [pg]  
Data set, strains Peters2   AXB BXA   28 strains     sex: both     age: 11wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Peters2 - mean RBC corpuscular hemoglobin (MCH)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means15.3   pg 15.1   pg
Median of the strain means15.4   pg 15.1   pg
SD of the strain means± 0.490 ± 0.455
Coefficient of variation (CV)0.0320 0.0301
Min–max range of strain means14.2   –   16.4   pg 14.3   –   16.0   pg
Mean sample size per strain7.7   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.6534 5.6534 43.6003 < 0.0001
strain 27 84.8342 3.142 24.2319 < 0.0001
sex:strain 27 7.6378 0.2829 2.1817 0.0007
Residuals 392 50.8283 0.1297


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
AXB10/PgnJ f 16.4 0.157   7 0.0595 0.0096 16.1, 16.6 2.18
AXB10/PgnJ m 16.0 0.473   8 0.167 0.0296 15.5, 16.9 1.96
AXB12/PgnJ f 15.8 0.459   10 0.145 0.029 15.2, 16.8 0.95
AXB12/PgnJ m 15.5 0.729   8 0.258 0.0469 14.8, 17.0 0.86
AXB13/PgnJ f 15.1 0.337   8 0.119 0.0223 14.7, 15.8 -0.47
AXB13/PgnJ m 15.2 0.293   8 0.104 0.0193 14.9, 15.7 0.2
AXB15/PgnJ f 15.1 0.46   8 0.163 0.0305 14.5, 15.8 -0.47
AXB15/PgnJ m 14.8 0.177   8 0.0627 0.0119 14.6, 15.1 -0.67
AXB19a/PgnJ f 15.5 0.296   8 0.105 0.0191 15.2, 16.1 0.34
AXB19a/PgnJ m 15.4 0.37   8 0.131 0.0241 14.7, 15.8 0.64
AXB19b/PgnJ f 15.9 0.501   7 0.19 0.0316 15.4, 16.9 1.16
AXB19b/PgnJ m 15.3 0.638   8 0.226 0.0417 14.1, 16.1 0.42
AXB19/PgnJ f 15.7 0.262   8 0.0926 0.0167 15.3, 16.0 0.75
AXB19/PgnJ m 15.4 0.192   8 0.068 0.0125 15.1, 15.7 0.64
AXB1/PgnJ f 15.6 0.367   5 0.164 0.0236 15.1, 16.0 0.55
AXB1/PgnJ m 15.1 0.378   8 0.134 0.025 14.3, 15.4 -0.02
AXB23/PgnJ f 15.8 0.453   5 0.202 0.0287 15.5, 16.6 0.95
AXB23/PgnJ m 15.5 0.189   7 0.0714 0.0122 15.3, 15.8 0.86
AXB24/PgnJ f 15.8 0.464   8 0.164 0.0294 15.3, 16.6 0.95
AXB24/PgnJ m 15.5 0.327   8 0.116 0.0211 14.8, 15.8 0.86
AXB2/PgnJ f 15.2 0.293   8 0.104 0.0192 15.0, 15.9 -0.27
AXB2/PgnJ m 15.0 0.242   8 0.0854 0.0161 14.5, 15.2 -0.24
AXB4/PgnJ f 15.6 0.288   6 0.117 0.0185 15.2, 16.0 0.55
AXB4/PgnJ m 14.6 0.253   8 0.0895 0.0173 14.3, 15.0 -1.11
AXB5/PgnJ f 15.8 0.264   7 0.0997 0.0166 15.6, 16.4 0.95
AXB5/PgnJ m 16.0 0.442   7 0.167 0.0276 15.7, 17.0 1.96
AXB6/PgnJ f 15.4 0.695   7 0.263 0.0452 14.9, 16.9 0.14
AXB6/PgnJ m 14.9 0.306   6 0.125 0.0206 14.5, 15.2 -0.45
AXB8/PgnJ f 14.6 0.376   7 0.142 0.0257 14.1, 15.1 -1.49
AXB8/PgnJ m 14.7 0.342   8 0.121 0.0234 14.3, 15.2 -0.89
BXA11/PgnJ f 15.4 0.22   8 0.0779 0.0143 15.0, 15.7 0.14
BXA11/PgnJ m 15.2 0.447   8 0.158 0.0295 14.5, 16.0 0.2
BXA12/PgnJ f 15.4 0.167   8 0.059 0.0109 15.2, 15.7 0.14
BXA12/PgnJ m 15.0 0.141   8 0.0498 0.00936 14.9, 15.3 -0.24
BXA13/PgnJ f 15.1 0.45   8 0.159 0.0297 14.7, 16.1 -0.47
BXA13/PgnJ m 15.5 0.196   8 0.0693 0.0127 15.2, 15.8 0.86
BXA14/PgnJ f 14.9 0.331   8 0.117 0.0222 14.6, 15.6 -0.88
BXA14/PgnJ m 14.8 0.0991   8 0.035 0.00669 14.7, 15.0 -0.67
BXA16/PgnJ f 14.6 0.344   8 0.122 0.0235 14.0, 14.9 -1.49
BXA16/PgnJ m 14.3 0.225   8 0.0796 0.0158 14.0, 14.7 -1.77
BXA1/PgnJ f 14.2 0.255   8 0.0901 0.0179 13.8, 14.7 -2.31
BXA1/PgnJ m 14.3 0.141   6 0.0577 0.00989 14.1, 14.5 -1.77
BXA24/PgnJ f 15.4 0.3   8 0.106 0.0194 14.9, 15.7 0.14
BXA24/PgnJ m 15.6 0.431   8 0.152 0.0275 15.1, 16.4 1.08
BXA25/PgnJ f 14.8 0.298   8 0.105 0.02 14.5, 15.3 -1.09
BXA25/PgnJ m 14.5 0.255   8 0.0901 0.0176 14.1, 14.9 -1.33
BXA26/PgnJ f 15.5 0.369   9 0.123 0.0238 15.0, 16.3 0.34
BXA26/PgnJ m 15.4 0.475   7 0.18 0.0309 14.7, 16.0 0.64
BXA2/PgnJ f 14.5 0.338   8 0.12 0.0232 14.0, 14.9 -1.7
BXA2/PgnJ m 14.5 0.414   10 0.131 0.0285 13.9, 15.1 -1.33
BXA4/PgnJ f 15.4 0.213   8 0.0754 0.0139 15.1, 15.7 0.14
BXA4/PgnJ m 15.0 0.173   8 0.0611 0.0115 14.7, 15.2 -0.24
BXA7/PgnJ f 15.6 0.382   8 0.135 0.0244 15.2, 16.3 0.55
BXA7/PgnJ m 15.2 0.2   8 0.0707 0.0132 14.8, 15.4 0.2
BXA8/PgnJ f 15.2 0.47   16 0.118 0.031 14.3, 16.0 -0.27
BXA8/PgnJ m 14.8 0.286   15 0.0738 0.0193 14.4, 15.5 -0.67


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ f 16.3857 0.1361 16.6533 16.1181
AXB10/PgnJ m 16.0125 0.1273 16.2628 15.7622
AXB12/PgnJ f 15.82 0.1139 16.0439 15.5961
AXB12/PgnJ m 15.525 0.1273 15.7753 15.2747
AXB13/PgnJ f 15.125 0.1273 15.3753 14.8747
AXB13/PgnJ m 15.2 0.1273 15.4503 14.9497
AXB15/PgnJ f 15.0625 0.1273 15.3128 14.8122
AXB15/PgnJ m 14.85 0.1273 15.1003 14.5997
AXB19a/PgnJ f 15.525 0.1273 15.7753 15.2747
AXB19a/PgnJ m 15.3625 0.1273 15.6128 15.1122
AXB19b/PgnJ f 15.8857 0.1361 16.1533 15.6181
AXB19b/PgnJ m 15.3125 0.1273 15.5628 15.0622
AXB19/PgnJ f 15.7 0.1273 15.9503 15.4497
AXB19/PgnJ m 15.4375 0.1273 15.6878 15.1872
AXB1/PgnJ f 15.6 0.161 15.9166 15.2834
AXB1/PgnJ m 15.1 0.1273 15.3503 14.8497
AXB23/PgnJ f 15.8 0.161 16.1166 15.4834
AXB23/PgnJ m 15.5286 0.1361 15.7962 15.261
AXB24/PgnJ f 15.7875 0.1273 16.0378 15.5372
AXB24/PgnJ m 15.4875 0.1273 15.7378 15.2372
AXB2/PgnJ f 15.25 0.1273 15.5003 14.9997
AXB2/PgnJ m 14.9875 0.1273 15.2378 14.7372
AXB4/PgnJ f 15.5667 0.147 15.8557 15.2776
AXB4/PgnJ m 14.6125 0.1273 14.8628 14.3622
AXB5/PgnJ f 15.8429 0.1361 16.1104 15.5753
AXB5/PgnJ m 16.0286 0.1361 16.2962 15.761
AXB6/PgnJ f 15.3714 0.1361 15.639 15.1038
AXB6/PgnJ m 14.8833 0.147 15.1724 14.5943
AXB8/PgnJ f 14.6143 0.1361 14.8819 14.3467
AXB8/PgnJ m 14.65 0.1273 14.9003 14.3997
BXA11/PgnJ f 15.4 0.1273 15.6503 15.1497
BXA11/PgnJ m 15.1625 0.1273 15.4128 14.9122
BXA12/PgnJ f 15.375 0.1273 15.6253 15.1247
BXA12/PgnJ m 15.0375 0.1273 15.2878 14.7872
BXA13/PgnJ f 15.125 0.1273 15.3753 14.8747
BXA13/PgnJ m 15.4875 0.1273 15.7378 15.2372
BXA14/PgnJ f 14.9125 0.1273 15.1628 14.6622
BXA14/PgnJ m 14.8125 0.1273 15.0628 14.5622
BXA16/PgnJ f 14.6125 0.1273 14.8628 14.3622
BXA16/PgnJ m 14.275 0.1273 14.5253 14.0247
BXA1/PgnJ f 14.225 0.1273 14.4753 13.9747
BXA1/PgnJ m 14.3 0.147 14.589 14.011
BXA24/PgnJ f 15.4125 0.1273 15.6628 15.1622
BXA24/PgnJ m 15.6375 0.1273 15.8878 15.3872
BXA25/PgnJ f 14.85 0.1273 15.1003 14.5997
BXA25/PgnJ m 14.475 0.1273 14.7253 14.2247
BXA26/PgnJ f 15.5111 0.12 15.7471 15.2751
BXA26/PgnJ m 15.3714 0.1361 15.639 15.1038
BXA2/PgnJ f 14.55 0.1273 14.8003 14.2997
BXA2/PgnJ m 14.54 0.1139 14.7639 14.3161
BXA4/PgnJ f 15.3625 0.1273 15.6128 15.1122
BXA4/PgnJ m 15.0125 0.1273 15.2628 14.7622
BXA7/PgnJ f 15.65 0.1273 15.9003 15.3997
BXA7/PgnJ m 15.15 0.1273 15.4003 14.8997
BXA8/PgnJ f 15.1625 0.09 15.3395 14.9855
BXA8/PgnJ m 14.78 0.093 14.9628 14.5972


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ both 16.1991 0.0932 16.3823 16.0159
AXB12/PgnJ both 15.6725 0.0854 15.8404 15.5046
AXB13/PgnJ both 15.1625 0.09 15.3395 14.9855
AXB15/PgnJ both 14.9562 0.09 15.1332 14.7793
AXB19a/PgnJ both 15.4437 0.09 15.6207 15.2668
AXB19b/PgnJ both 15.5991 0.0932 15.7823 15.4159
AXB19/PgnJ both 15.5687 0.09 15.7457 15.3918
AXB1/PgnJ both 15.35 0.1026 15.5518 15.1482
AXB23/PgnJ both 15.6643 0.1054 15.8716 15.457
AXB24/PgnJ both 15.6375 0.09 15.8145 15.4605
AXB2/PgnJ both 15.1187 0.09 15.2957 14.9418
AXB4/PgnJ both 15.0896 0.0972 15.2808 14.8984
AXB5/PgnJ both 15.9357 0.0962 16.1249 15.7465
AXB6/PgnJ both 15.1274 0.1002 15.3243 14.9304
AXB8/PgnJ both 14.6321 0.0932 14.8153 14.4489
BXA11/PgnJ both 15.2812 0.09 15.4582 15.1043
BXA12/PgnJ both 15.2062 0.09 15.3832 15.0293
BXA13/PgnJ both 15.3062 0.09 15.4832 15.1293
BXA14/PgnJ both 14.8625 0.09 15.0395 14.6855
BXA16/PgnJ both 14.4437 0.09 14.6207 14.2668
BXA1/PgnJ both 14.2625 0.0972 14.4537 14.0713
BXA24/PgnJ both 15.525 0.09 15.702 15.348
BXA25/PgnJ both 14.6625 0.09 14.8395 14.4855
BXA26/PgnJ both 15.4413 0.0907 15.6197 15.2629
BXA2/PgnJ both 14.545 0.0854 14.7129 14.3771
BXA4/PgnJ both 15.1875 0.09 15.3645 15.0105
BXA7/PgnJ both 15.4 0.09 15.577 15.223
BXA8/PgnJ both 14.9712 0.0647 15.0985 14.844




  GWAS USING LINEAR MIXED MODELS