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Project measure / variable:   Peters2   HCT

ID, description, units MPD:6504   HCT   hematocrit (HCT)   [%]  
Data set, strains Peters2   AXB BXA   28 strains     sex: both     age: 11wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Peters2 - hematocrit (HCT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains28 strains
Mean of the strain means40.9   % 40.5   %
Median of the strain means41.0   % 40.4   %
SD of the strain means± 1.55 ± 1.53
Coefficient of variation (CV)0.0379 0.0379
Min–max range of strain means37.4   –   43.0   % 36.6   –   43.3   %
Mean sample size per strain7.7   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 18.3328 18.3328 3.8942 0.0492
strain 27 703.2386 26.0459 5.5326 < 0.0001
sex:strain 27 276.0887 10.2255 2.1721 0.0008
Residuals 393 1850.1279 4.7077


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
AXB10/PgnJ f 40.4 1.35   7 0.511 0.0335 38.8, 41.9 -0.34
AXB10/PgnJ m 36.6 0.59   8 0.209 0.0161 35.7, 37.5 -2.53
AXB12/PgnJ f 41.5 2.58   10 0.816 0.0623 36.2, 45.8 0.36
AXB12/PgnJ m 42.5 1.06   8 0.374 0.0248 41.6, 44.2 1.31
AXB13/PgnJ f 42.9 1.51   8 0.534 0.0352 40.0, 44.3 1.26
AXB13/PgnJ m 42.1 1.15   8 0.405 0.0272 39.8, 43.1 1.05
AXB15/PgnJ f 37.4 1.4   8 0.494 0.0373 35.9, 39.8 -2.28
AXB15/PgnJ m 39.2 1.59   8 0.563 0.0406 37.5, 42.8 -0.84
AXB19a/PgnJ f 41.8 3.48   8 1.23 0.0833 37.0, 49.3 0.56
AXB19a/PgnJ m 41.3 1.68   8 0.594 0.0407 39.5, 43.9 0.53
AXB19b/PgnJ f 42.4 3.47   7 1.31 0.0819 36.9, 48.3 0.94
AXB19b/PgnJ m 42.2 2.26   8 0.798 0.0534 38.5, 45.8 1.11
AXB19/PgnJ f 39.3 1.89   8 0.667 0.048 36.4, 42.4 -1.05
AXB19/PgnJ m 39.5 1.97   8 0.696 0.0498 36.6, 41.7 -0.64
AXB1/PgnJ f 43.0 3.28   5 1.47 0.0762 38.7, 47.3 1.33
AXB1/PgnJ m 38.8 2.39   8 0.843 0.0615 35.3, 42.4 -1.1
AXB23/PgnJ f 43.0 0.969   5 0.433 0.0225 41.6, 43.9 1.33
AXB23/PgnJ m 41.7 1.74   7 0.657 0.0417 38.4, 43.4 0.79
AXB24/PgnJ f 38.4 2.17   8 0.767 0.0565 35.6, 42.2 -1.63
AXB24/PgnJ m 42.4 3.83   8 1.35 0.0905 37.2, 50.2 1.25
AXB2/PgnJ f 39.3 2.56   8 0.906 0.0652 37.0, 43.5 -1.05
AXB2/PgnJ m 38.9 2.8   8 0.99 0.0721 35.2, 43.7 -1.04
AXB4/PgnJ f 41.8 2.58   6 1.05 0.0616 37.2, 44.4 0.56
AXB4/PgnJ m 40.7 2.31   9 0.771 0.0568 36.8, 43.8 0.14
AXB5/PgnJ f 42.8 1.06   7 0.401 0.0248 41.5, 44.5 1.2
AXB5/PgnJ m 40.5 2.24   7 0.845 0.0552 36.5, 43.0 0.01
AXB6/PgnJ f 42.1 3.0   7 1.13 0.0713 35.8, 44.8 0.75
AXB6/PgnJ m 43.0 1.93   6 0.786 0.0448 41.1, 46.0 1.64
AXB8/PgnJ f 39.9 3.06   7 1.16 0.0766 33.4, 42.2 -0.67
AXB8/PgnJ m 38.1 1.98   8 0.702 0.0521 35.3, 41.9 -1.56
BXA11/PgnJ f 41.1 1.06   8 0.374 0.0257 39.8, 43.2 0.11
BXA11/PgnJ m 40.4 3.02   8 1.07 0.0747 38.1, 47.4 -0.06
BXA12/PgnJ f 41.0 1.67   8 0.589 0.0406 38.4, 43.5 0.04
BXA12/PgnJ m 40.2 1.9   8 0.673 0.0474 35.9, 41.8 -0.19
BXA13/PgnJ f 42.3 1.7   8 0.6 0.0401 39.9, 44.7 0.88
BXA13/PgnJ m 43.3 1.25   8 0.444 0.029 41.8, 45.5 1.83
BXA14/PgnJ f 39.6 1.62   8 0.574 0.041 36.8, 42.0 -0.86
BXA14/PgnJ m 39.5 1.38   8 0.487 0.0349 37.4, 41.1 -0.64
BXA16/PgnJ f 38.7 1.92   8 0.68 0.0497 34.5, 40.3 -1.44
BXA16/PgnJ m 39.3 1.7   8 0.602 0.0434 36.8, 41.2 -0.78
BXA1/PgnJ f 42.8 1.74   8 0.614 0.0407 39.9, 45.6 1.2
BXA1/PgnJ m 41.0 1.02   6 0.416 0.0249 39.8, 42.7 0.33
BXA24/PgnJ f 42.4 5.39   8 1.9 0.127 36.9, 48.8 0.94
BXA24/PgnJ m 39.9 2.3   8 0.812 0.0575 37.9, 44.0 -0.38
BXA25/PgnJ f 40.7 1.06   8 0.374 0.026 38.8, 42.1 -0.15
BXA25/PgnJ m 39.6 2.35   8 0.83 0.0592 34.9, 42.3 -0.58
BXA26/PgnJ f 41.0 0.895   9 0.298 0.0218 39.9, 42.6 0.04
BXA26/PgnJ m 41.4 2.1   7 0.793 0.0507 39.3, 44.7 0.59
BXA2/PgnJ f 40.9 1.82   8 0.642 0.0444 37.7, 43.5 -0.02
BXA2/PgnJ m 40.9 2.13   10 0.672 0.0519 37.7, 45.1 0.27
BXA4/PgnJ f 39.6 1.74   8 0.614 0.0439 37.0, 42.4 -0.86
BXA4/PgnJ m 40.2 2.14   8 0.755 0.0531 37.0, 42.6 -0.19
BXA7/PgnJ f 39.5 1.21   8 0.427 0.0306 38.0, 41.2 -0.92
BXA7/PgnJ m 40.4 1.2   8 0.426 0.0298 38.9, 42.2 -0.06
BXA8/PgnJ f 40.6 2.0   16 0.501 0.0494 35.5, 43.2 -0.22
BXA8/PgnJ m 40.1 2.22   15 0.573 0.0553 34.8, 44.0 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ f 40.3571 0.8201 41.9694 38.7449
AXB10/PgnJ m 36.6375 0.7671 38.1457 35.1293
AXB12/PgnJ f 41.45 0.6861 42.7989 40.1011
AXB12/PgnJ m 42.55 0.7671 44.0582 41.0418
AXB13/PgnJ f 42.9125 0.7671 44.4207 41.4043
AXB13/PgnJ m 42.1375 0.7671 43.6457 40.6293
AXB15/PgnJ f 37.425 0.7671 38.9332 35.9168
AXB15/PgnJ m 39.2375 0.7671 40.7457 37.7293
AXB19a/PgnJ f 41.825 0.7671 43.3332 40.3168
AXB19a/PgnJ m 41.2625 0.7671 42.7707 39.7543
AXB19b/PgnJ f 42.3857 0.8201 43.998 40.7734
AXB19b/PgnJ m 42.25 0.7671 43.7582 40.7418
AXB19/PgnJ f 39.3 0.7671 40.8082 37.7918
AXB19/PgnJ m 39.5 0.7671 41.0082 37.9918
AXB1/PgnJ f 43.02 0.9703 44.9277 41.1123
AXB1/PgnJ m 38.775 0.7671 40.2832 37.2668
AXB23/PgnJ f 42.96 0.9703 44.8677 41.0523
AXB23/PgnJ m 41.6571 0.8201 43.2694 40.0449
AXB24/PgnJ f 38.45 0.7671 39.9582 36.9418
AXB24/PgnJ m 42.35 0.7671 43.8582 40.8418
AXB2/PgnJ f 39.3375 0.7671 40.8457 37.8293
AXB2/PgnJ m 38.8625 0.7671 40.3707 37.3543
AXB4/PgnJ f 41.8167 0.8858 43.5581 40.0752
AXB4/PgnJ m 40.7 0.7232 42.1219 39.2781
AXB5/PgnJ f 42.8143 0.8201 44.4266 41.202
AXB5/PgnJ m 40.4714 0.8201 42.0837 38.8591
AXB6/PgnJ f 42.0857 0.8201 43.698 40.4734
AXB6/PgnJ m 43.0167 0.8858 44.7581 41.2752
AXB8/PgnJ f 39.9 0.8201 41.5123 38.2877
AXB8/PgnJ m 38.075 0.7671 39.5832 36.5668
BXA11/PgnJ f 41.0875 0.7671 42.5957 39.5793
BXA11/PgnJ m 40.4 0.7671 41.9082 38.8918
BXA12/PgnJ f 41.0 0.7671 42.5082 39.4918
BXA12/PgnJ m 40.175 0.7671 41.6832 38.6668
BXA13/PgnJ f 42.3125 0.7671 43.8207 40.8043
BXA13/PgnJ m 43.325 0.7671 44.8332 41.8168
BXA14/PgnJ f 39.5875 0.7671 41.0957 38.0793
BXA14/PgnJ m 39.4875 0.7671 40.9957 37.9793
BXA16/PgnJ f 38.7125 0.7671 40.2207 37.2043
BXA16/PgnJ m 39.2625 0.7671 40.7707 37.7543
BXA1/PgnJ f 42.75 0.7671 44.2582 41.2418
BXA1/PgnJ m 40.9667 0.8858 42.7081 39.2252
BXA24/PgnJ f 42.425 0.7671 43.9332 40.9168
BXA24/PgnJ m 39.9375 0.7671 41.4457 38.4293
BXA25/PgnJ f 40.7125 0.7671 42.2207 39.2043
BXA25/PgnJ m 39.6375 0.7671 41.1457 38.1293
BXA26/PgnJ f 41.0111 0.7232 42.433 39.5892
BXA26/PgnJ m 41.4 0.8201 43.0123 39.7877
BXA2/PgnJ f 40.9 0.7671 42.4082 39.3918
BXA2/PgnJ m 40.93 0.6861 42.2789 39.5811
BXA4/PgnJ f 39.55 0.7671 41.0582 38.0418
BXA4/PgnJ m 40.175 0.7671 41.6832 38.6668
BXA7/PgnJ f 39.475 0.7671 40.9832 37.9668
BXA7/PgnJ m 40.35 0.7671 41.8582 38.8418
BXA8/PgnJ f 40.5688 0.5424 41.6352 39.5023
BXA8/PgnJ m 40.1067 0.5602 41.2081 39.0053


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
AXB10/PgnJ both 38.4973 0.5615 39.6012 37.3935
AXB12/PgnJ both 42.0 0.5146 43.0117 40.9883
AXB13/PgnJ both 42.525 0.5424 43.5914 41.4586
AXB15/PgnJ both 38.3313 0.5424 39.3977 37.2648
AXB19a/PgnJ both 41.5438 0.5424 42.6102 40.4773
AXB19b/PgnJ both 42.3179 0.5615 43.4217 41.214
AXB19/PgnJ both 39.4 0.5424 40.4664 38.3336
AXB1/PgnJ both 40.8975 0.6185 42.1134 39.6816
AXB23/PgnJ both 42.3086 0.6352 43.5574 41.0597
AXB24/PgnJ both 40.4 0.5424 41.4664 39.3336
AXB2/PgnJ both 39.1 0.5424 40.1664 38.0336
AXB4/PgnJ both 41.2583 0.5718 42.3824 40.1342
AXB5/PgnJ both 41.6429 0.5799 42.7829 40.5028
AXB6/PgnJ both 42.5512 0.6036 43.7378 41.3646
AXB8/PgnJ both 38.9875 0.5615 40.0914 37.8836
BXA11/PgnJ both 40.7438 0.5424 41.8102 39.6773
BXA12/PgnJ both 40.5875 0.5424 41.6539 39.5211
BXA13/PgnJ both 42.8188 0.5424 43.8852 41.7523
BXA14/PgnJ both 39.5375 0.5424 40.6039 38.4711
BXA16/PgnJ both 38.9875 0.5424 40.0539 37.9211
BXA1/PgnJ both 41.8583 0.5859 43.0102 40.7065
BXA24/PgnJ both 41.1813 0.5424 42.2477 40.1148
BXA25/PgnJ both 40.175 0.5424 41.2414 39.1086
BXA26/PgnJ both 41.2056 0.5467 42.2804 40.1307
BXA2/PgnJ both 40.915 0.5146 41.9267 39.9033
BXA4/PgnJ both 39.8625 0.5424 40.9289 38.7961
BXA7/PgnJ both 39.9125 0.5424 40.9789 38.8461
BXA8/PgnJ both 40.3377 0.3899 41.1043 39.5712




  GWAS USING LINEAR MIXED MODELS