Project measure / variable:   Bolivar2   act_cued_3

ID, description, units MPD:63919   act_cued_3   activity (beam breaks) during 1 min period of cued conditioning on day 2   [n]  3rd min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of cued conditioning on day 2 3rd min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means38.471   n 45.938   n
Median of the strain means42.5   n 50.75   n
SD of the strain means± 18.638 ± 21.523
Coefficient of variation (CV)0.4845 0.4685
Min–max range of strain means4.0556   –   59.44   n 6.1111   –   69.39   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4012.5868 4012.5868 6.0604 0.0144
strain 7 89627.8854 12803.9836 19.3385 < 0.0001
sex:strain 7 12511.4965 1787.3566 2.6995 0.0102
Residuals 272 180090.9444 662.0991


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.0556 5.5357   18 1.3048 1.365 -1.85
129S1/SvImJ m 6.1111 7.259   18 1.711 1.1878 -1.85
A/J f 47.556 30.469   18 7.1817 0.6407 10.0, 103.0 0.49
A/J m 54.22 33.855   18 7.9798 0.6244 0.38
BALB/cByJ f 21.778 29.983   18 7.0672 1.3768 2.0, 104.0 -0.9
BALB/cByJ m 23.667 19.796   18 4.666 0.8365 1.0, 71.0 -1.03
C3H/HeJ f 59.44 26.255   18 6.1883 0.4417 14.0, 105.0 1.13
C3H/HeJ m 54.39 31.051   18 7.3187 0.5709 13.0, 112.0 0.39
C57BL/6J f 32.722 19.996   18 4.7132 0.6111 2.0, 79.0 -0.31
C57BL/6J m 47.278 19.544   18 4.6066 0.4134 15.0, 81.0 0.06
CBA/J f 57.22 31.199   18 7.3536 0.5452 5.0, 134.0 1.01
CBA/J m 44.889 22.85   18 5.3857 0.509 16.0, 83.0 -0.05
DBA/2J f 38.667 22.528   18 5.31 0.5826 0.01
DBA/2J m 69.39 24.971   18 5.8857 0.3599 21.0, 110.0 1.09
FVB/NJ f 46.333 29.382   18 6.9254 0.6341 3.0, 113.0 0.42
FVB/NJ m 67.56 34.924   18 8.2316 0.517 4.0, 143.0 1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.0556 6.0649 15.9957 -7.8846
129S1/SvImJ m 6.1111 6.0649 18.0513 -5.829
A/J f 47.5556 6.0649 59.4957 35.6154
A/J m 54.2222 6.0649 66.1624 42.2821
BALB/cByJ f 21.7778 6.0649 33.7179 9.8376
BALB/cByJ m 23.6667 6.0649 35.6068 11.7265
C3H/HeJ f 59.4444 6.0649 71.3846 47.5043
C3H/HeJ m 54.3889 6.0649 66.329 42.4487
C57BL/6J f 32.7222 6.0649 44.6624 20.7821
C57BL/6J m 47.2778 6.0649 59.2179 35.3376
CBA/J f 57.2222 6.0649 69.1624 45.2821
CBA/J m 44.8889 6.0649 56.829 32.9487
DBA/2J f 38.6667 6.0649 50.6068 26.7265
DBA/2J m 69.3889 6.0649 81.329 57.4487
FVB/NJ f 46.3333 6.0649 58.2735 34.3932
FVB/NJ m 67.5556 6.0649 79.4957 55.6154


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.0833 4.2885 13.5263 -3.3596
A/J both 50.8889 4.2885 59.3319 42.4459
BALB/cByJ both 22.7222 4.2885 31.1652 14.2793
C3H/HeJ both 56.9167 4.2885 65.3596 48.4737
C57BL/6J both 40.0 4.2885 48.443 31.557
CBA/J both 51.0556 4.2885 59.4985 42.6126
DBA/2J both 54.0278 4.2885 62.4707 45.5848
FVB/NJ both 56.9444 4.2885 65.3874 48.5015




  GWAS USING LINEAR MIXED MODELS