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Project measure / variable:   Bolivar2   act_altered_3

ID, description, units MPD:63915   act_altered_3   activity (beam breaks) during 1 min period of altered context on day 2   [n]  3rd min  
Data set, strains Bolivar2   inbred   8 strains     sex: both     age: 9-20wks
Procedure fear conditioning test
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  STRAIN COMPARISON PLOT
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Bolivar2 - activity (beam breaks) during 1 min period of altered context on day 2 3rd min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means88.52   n 96.15   n
Median of the strain means93.66   n 110.2   n
SD of the strain means± 31.912 ± 30.483
Coefficient of variation (CV)0.3605 0.317
Min–max range of strain means28.0   –   125.4   n 41.111   –   123.2   n
Mean sample size per strain18.0   mice 18.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4178.5035 4178.5035 4.7678 0.0299
strain 7 239777.4132 34253.9162 39.0845 < 0.0001
sex:strain 7 5551.0243 793.0035 0.9048 0.5031
Residuals 272 238382.7222 876.4071


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 28.0 23.052   18 5.4335 0.8233 4.0, 92.0 -1.9
129S1/SvImJ m 41.111 42.071   18 9.9163 1.0234 3.0, 146.0 -1.81
A/J f 57.89 34.477   18 8.1264 0.5956 8.0, 120.0 -0.96
A/J m 59.0 26.406   18 6.224 0.4476 12.0, 94.0 -1.22
BALB/cByJ f 125.4 25.819   18 6.0855 0.2059 70.0, 165.0 1.16
BALB/cByJ m 119.9 41.832   18 9.86 0.3488 18.0, 180.0 0.78
C3H/HeJ f 89.33 20.24   18 4.7706 0.2266 50.0, 128.0 0.03
C3H/HeJ m 90.61 27.794   18 6.551 0.3067 39.0, 141.0 -0.18
C57BL/6J f 98.0 30.125   18 7.1006 0.3074 49.0, 146.0 0.3
C57BL/6J m 107.2 21.842   18 5.1483 0.2038 63.0, 150.0 0.36
CBA/J f 116.4 28.853   18 6.8007 0.2479 73.0, 166.0 0.87
CBA/J m 123.2 36.366   18 8.5716 0.2953 60.0, 196.0 0.89
DBA/2J f 87.33 26.023   18 6.1336 0.298 21.0, 125.0 -0.04
DBA/2J m 113.1 34.615   18 8.1587 0.3062 44.0, 201.0 0.56
FVB/NJ f 105.8 18.872   18 4.4481 0.1783 69.0, 150.0 0.54
FVB/NJ m 115.1 21.572   18 5.0846 0.1875 79.0, 153.0 0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 28.0 6.9778 41.7373 14.2627
129S1/SvImJ m 41.1111 6.9778 54.8484 27.3738
A/J f 57.8889 6.9778 71.6262 44.1516
A/J m 59.0 6.9778 72.7373 45.2627
BALB/cByJ f 125.3889 6.9778 139.1262 111.6516
BALB/cByJ m 119.9444 6.9778 133.6817 106.2071
C3H/HeJ f 89.3333 6.9778 103.0706 75.596
C3H/HeJ m 90.6111 6.9778 104.3484 76.8738
C57BL/6J f 98.0 6.9778 111.7373 84.2627
C57BL/6J m 107.1667 6.9778 120.904 93.4294
CBA/J f 116.3889 6.9778 130.1262 102.6516
CBA/J m 123.1667 6.9778 136.904 109.4294
DBA/2J f 87.3333 6.9778 101.0706 73.596
DBA/2J m 113.0556 6.9778 126.7929 99.3183
FVB/NJ f 105.8333 6.9778 119.5706 92.096
FVB/NJ m 115.0556 6.9778 128.7929 101.3183


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 34.5556 4.934 44.2693 24.8418
A/J both 58.4444 4.934 68.1582 48.7307
BALB/cByJ both 122.6667 4.934 132.3804 112.9529
C3H/HeJ both 89.9722 4.934 99.686 80.2585
C57BL/6J both 102.5833 4.934 112.2971 92.8696
CBA/J both 119.7778 4.934 129.4915 110.064
DBA/2J both 100.1944 4.934 109.9082 90.4807
FVB/NJ both 110.4444 4.934 120.1582 100.7307




  GWAS USING LINEAR MIXED MODELS