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Project measure / variable:   Lesage1   pre_mNK_of_NK

ID, description, units MPD:63508   pre_mNK_of_NK   percentage of splenic NK cells that are pre-mNK (B220+ CD11c+)   [%]  
Data set, strains Lesage1   CC w/par   76 strains     sex: both     age: 5-8wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Lesage1 - percentage of splenic NK cells that are pre-mNK (B220+ CD11c+)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested47 strains64 strains
Mean of the strain means7.7594   % 6.9008   %
Median of the strain means6.81   % 5.7966   %
SD of the strain means± 5.1285 ± 4.3799
Coefficient of variation (CV)0.6609 0.6347
Min–max range of strain means1.41   –   24.05   % 1.69   –   23.7   %
Mean sample size per strain2.3   mice 2.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.376 0.376 0.1961 0.6606
strain 11 1701.75 154.7045 80.665 < 0.0001
sex:strain 11 38.2094 3.4736 1.8112 0.0885
Residuals 36 69.0431 1.9179


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 7.375 0.23335   2   0.165 0.0316 7.21, 7.54 -0.07
129S1/SvImJ m 5.535 0.03536   2   0.025 0.0064 5.51, 5.56 -0.31
A/J f 12.85 3.3234   2   2.35 0.2586 10.5, 15.2 0.99
A/J m 13.75 0.07071   2   0.05 0.0051 13.7, 13.8 1.56
C57BL/6J f 7.9825 1.2129   4 0.60644 0.1519 7.01, 9.66 0.04
C57BL/6J m 6.84 0.0   1   0.0 0.0 6.84, 6.84 -0.01
CAST/EiJ f 13.75 2.3335   2   1.65 0.1697 12.1, 15.4 1.17
CAST/EiJ m 11.75 1.2021   2   0.85 0.1023 10.9, 12.6 1.11
CC008/Geni m 5.64 0.05657   2   0.04 0.01 5.6, 5.68 -0.29
CC010/Geni f 4.62 0.82024   2   0.58 0.1775 4.04, 5.2 -0.61
CC010/Geni m 3.81 0.0   1   0.0 0.0 3.81, 3.81 -0.71
CC012/Geni f 3.3533 0.82887   3 0.47855 0.2472 2.85, 4.31 -0.86
CC012/Geni m 3.892 0.37792   5 0.16901 0.0971 3.39, 4.31 -0.69
CC013/Geni m 10.617 3.0234   3 1.7455 0.2848 7.25, 13.1 0.85
CC016/Geni m 6.0933 1.2329   3 0.71184 0.2023 5.02, 7.44 -0.18
CC020/Geni f 5.25 0.0   1   0.0 0.0 5.25, 5.25 -0.49
CC020/Geni m 4.22 0.11314   2   0.08 0.0268 4.14, 4.3 -0.61
CC023/Geni m 15.4 1.4799   3 0.8544 0.0961 14.4, 17.1 1.94
CC024/Geni f 1.88 0.2687   2   0.19 0.1429 1.69, 2.07 -1.15
CC024/Geni m 3.0 0.0   1   0.0 0.0 3.0, 3.0 -0.89
CC025/Geni f 5.8733 0.99606   3 0.57507 0.1696 4.76, 6.68 -0.37
CC026/Geni m 4.48 0.59102   3 0.34122 0.1319 4.09, 5.16 -0.55
CC027/Geni f 4.83 0.0   1   0.0 0.0 4.83, 4.83 -0.57
CC027/Geni m 6.285 1.6758   2   1.185 0.2666 5.1, 7.47 -0.14
CC030/Geni f 9.73 0.94752   2   0.67 0.0974 9.06, 10.4 0.38
CC031/Geni f 3.03 0.0   1   0.0 0.0 3.03, 3.03 -0.92
CC031/Geni m 3.72 0.21213   2   0.15 0.057 3.57, 3.87 -0.73
CC032/Geni m 11.367 1.0408   3 0.60093 0.0916 10.2, 12.2 1.02
CC033/Geni f 18.1 7.2918   3 4.2099 0.4029 13.4, 26.5 2.02
CC038/Geni f 24.05 4.3134   2   3.05 0.1793 21.0, 27.1 3.18
CC038/Geni m 23.7 0.0   1   0.0 0.0 23.7, 23.7 3.84
CC042/Geni m 4.1667 0.80513   3 0.46484 0.1932 3.37, 4.98 -0.62
CC043/Geni m 9.02 1.2501   3 0.72173 0.1386 7.71, 10.2 0.48
CC056/Geni f 15.5 0.0   1   0.0 0.0 15.5, 15.5 1.51
CC056/Geni m 10.7 0.84853   2   0.6 0.0793 10.1, 11.3 0.87
CC061/Geni m 6.5767 0.31005   3 0.17901 0.0471 6.35, 6.93 -0.07
CIV2_FE f 4.5533 0.8476   3 0.48936 0.1862 4.01, 5.53 -0.63
DET3_GA m 3.1367 0.03512   3 0.02028 0.0112 3.1, 3.17 -0.86
DONNELL_HA f 16.5 1.9799   2   1.4 0.12 15.1, 17.9 1.7
DONNELL_HA m 13.667 1.124   3 0.64893 0.0822 12.7, 14.9 1.54
FIV_AC m 3.8875 1.2072   4 0.60362 0.3105 2.72, 5.42 -0.69
FUF_HE f 8.35 0.33181   3 0.19157 0.0397 8.0, 8.66 0.12
GALASUPREME_CE m 8.8667 0.25541   3 0.14746 0.0288 8.58, 9.07 0.45
GIT_GC f 4.03 0.0   1   0.0 0.0 4.03, 4.03 -0.73
GIT_GC m 4.47 0.09899   2   0.07 0.0221 4.4, 4.54 -0.55
HAX2_EF f 1.4833 0.15822   3 0.09135 0.1067 1.31, 1.62 -1.22
HAZ_FE f 7.14 0.0   1   0.0 0.0 7.14, 7.14 -0.12
HAZ_FE m 6.24 1.8385   2   1.3 0.2946 4.94, 7.54 -0.15
HIP_GA f 10.2 0.0   1   0.0 0.0 10.2, 10.2 0.48
HIP_GA m 9.61 0.12728   2   0.09 0.0132 9.52, 9.7 0.62
HOE_GC f 8.4 0.0   1   0.0 0.0 8.4, 8.4 0.12
HOE_GC m 9.12 0.2687   2   0.19 0.0295 8.93, 9.31 0.51
JUD_EF m 4.6475 0.98463   4 0.49231 0.2119 3.41, 5.65 -0.51
KAV_AF f 2.705 0.50205   2   0.355 0.1856 2.35, 3.06 -0.99
KAV_AF m 1.69 0.0   1   0.0 0.0 1.69, 1.69 -1.19
LAM_DC f 12.5 0.0   1   0.0 0.0 12.5, 12.5 0.92
LAM_DC m 13.35 1.6263   2   1.15 0.1218 12.2, 14.5 1.47
LAT_HD f 5.09 1.029   5 0.46016 0.2022 3.92, 6.71 -0.52
LAT_HD m 8.07 1.0182   2   0.72 0.1262 7.35, 8.79 0.27
LAX_FC f 2.47 0.0   1   0.0 0.0 2.47, 2.47 -1.03
LAX_FC m 3.16 0.0   1   0.0 0.0 3.16, 3.16 -0.85
LEL_FH m 6.095 0.41719   2   0.295 0.0684 5.8, 6.39 -0.18
LIP_BG f 6.98 1.9389   4 0.96944 0.2778 4.7, 8.98 -0.15
LIP_BG m 9.56 0.0   1   0.0 0.0 9.56, 9.56 0.61
LIV_DA f 8.11 0.0   1   0.0 0.0 8.11, 8.11 0.07
LIV_DA m 7.205 1.3647   2   0.965 0.1894 6.24, 8.17 0.07
LOD_AE f 17.2 1.3229   3 0.76376 0.0769 15.7, 18.2 1.84
LOM_BG m 2.9833 0.46004   3 0.2656 0.1542 2.52, 3.44 -0.89
LOT_FC f 3.9033 1.4835   6 0.60562 0.3801 2.26, 5.5 -0.75
LOX_GF m 3.41 0.5671   3 0.32741 0.1663 2.97, 4.05 -0.8
LUF_AD m 3.238 0.28622   5 0.128 0.0884 2.86, 3.53 -0.84
LUG_EH m 7.9233 1.1504   3 0.66416 0.1452 6.79, 9.09 0.23
LUS_AH f 10.127 0.32347   3 0.18676 0.0319 9.93, 10.5 0.46
LUV_DG m 1.9575 0.41764   4 0.20882 0.2134 1.43, 2.34 -1.13
LUZ_FH f 5.09 2.0599   4 1.03 0.4047 2.98, 7.86 -0.52
LUZ_FH m 6.36 0.0   1   0.0 0.0 6.36, 6.36 -0.12
MERCURI_HF m 13.767 0.70238   3 0.40552 0.051 13.1, 14.5 1.57
NOD/ShiLtJ f 2.52 0.29698   2   0.21 0.1179 2.31, 2.73 -1.02
NOD/ShiLtJ m 3.27 0.5374   2   0.38 0.1643 2.89, 3.65 -0.83
NZO/HlLtJ f 6.81 1.3859   2   0.98 0.2035 5.83, 7.79 -0.19
NZO/HlLtJ m 5.71 0.3677   2   0.26 0.0644 5.45, 5.97 -0.27
PAT_CD m 2.24 0.46893   3 0.27074 0.2093 1.74, 2.67 -1.06
PEF_EC f 18.133 1.914   3 1.105 0.1056 16.0, 19.7 2.02
PEF_EC m 18.0 0.43589   3 0.25166 0.0242 17.5, 18.3 2.53
POH_DC f 8.84 2.2634   3 1.3068 0.256 6.32, 10.7 0.21
PWK/PhJ f 9.865 2.7365   2   1.935 0.2774 7.93, 11.8 0.41
PWK/PhJ m 11.58 4.4123   2   3.12 0.381 8.46, 14.7 1.07
SEH_AH f 5.19 0.0   1   0.0 0.0 5.19, 5.19 -0.5
SEH_AH m 8.0225 1.7079   4 0.85393 0.2129 5.47, 9.03 0.26
STUCKY_HF f 9.23 3.4121   3 1.97 0.3697 5.29, 11.2 0.29
STUCKY_HF m 7.0 0.0   1   0.0 0.0 7.0, 7.0 0.02
VIT_ED f 4.2167 1.9638   3 1.1338 0.4657 2.87, 6.47 -0.69
VUX2_HF m 4.2267 0.35921   3 0.20739 0.085 3.83, 4.53 -0.61
WAD f 8.5033 1.4459   3 0.83479 0.17 6.84, 9.46 0.15
WSB/EiJ f 3.61 0.24042   2   0.17 0.0666 3.44, 3.78 -0.81
WSB/EiJ m 2.45 0.12728   2   0.09 0.052 2.36, 2.54 -1.02
XAD8_BG f 3.95 0.0   1   0.0 0.0 3.95, 3.95 -0.74
XAD8_BG m 5.34 0.33151   3 0.1914 0.0621 4.96, 5.57 -0.36
XAH3_GH m 5.8833 0.33471   3 0.19325 0.0569 5.62, 6.26 -0.23
XAS4_AF m 2.0633 0.40079   3 0.2314 0.1942 1.77, 2.52 -1.1
XAV_AH m 2.64 0.50408   3 0.29103 0.1909 2.2, 3.19 -0.97
XAW2_CD m 3.975 0.00707107   2   0.005 0.0018 3.97, 3.98 -0.67
XEB2_AG f 1.41 0.1044   3 0.06028 0.074 1.29, 1.48 -1.24
XEB2_AG m 2.2533 0.30892   3 0.17836 0.1371 1.92, 2.53 -1.06
XEB_AF f 3.07 0.01414   2   0.01 0.0046 3.06, 3.08 -0.91
XEB_AF m 2.56 0.0   1   0.0 0.0 2.56, 2.56 -0.99
XEQ_EH m 4.7333 0.64299   3 0.37123 0.1358 4.01, 5.24 -0.49
XXEN2_DC m 3.8067 0.68806   3 0.39725 0.1808 3.3, 4.59 -0.71
XXEN3_DC f 6.34 0.0   1   0.0 0.0 6.34, 6.34 -0.28
XXEN3_DC m 11.3 0.0   1   0.0 0.0 11.3, 11.3 1.0
YOX_DE m 11.623 2.84   3 1.6397 0.2443 9.87, 14.9 1.08


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 7.375 0.9793 9.361 5.389
129S1/SvImJ m 5.535 0.9793 7.521 3.549
A/J f 12.85 0.9793 14.836 10.864
A/J m 13.75 0.9793 15.736 11.764
CAST/EiJ f 13.75 0.9793 15.736 11.764
CAST/EiJ m 11.75 0.9793 13.736 9.764
CC012/Geni f 3.3533 0.7996 4.9749 1.7318
CC012/Geni m 3.892 0.6193 5.1481 2.6359
DONNELL_HA f 16.5 0.9793 18.486 14.514
DONNELL_HA m 13.6667 0.7996 15.2882 12.0451
LAT_HD f 5.09 0.6193 6.3461 3.8339
LAT_HD m 8.07 0.9793 10.056 6.084
NOD/ShiLtJ f 2.52 0.9793 4.506 0.534
NOD/ShiLtJ m 3.27 0.9793 5.256 1.284
NZO/HlLtJ f 6.81 0.9793 8.796 4.824
NZO/HlLtJ m 5.71 0.9793 7.696 3.724
PEF_EC f 18.1333 0.7996 19.7549 16.5118
PEF_EC m 18.0 0.7996 19.6216 16.3784
PWK/PhJ f 9.865 0.9793 11.851 7.879
PWK/PhJ m 11.58 0.9793 13.566 9.594
WSB/EiJ f 3.61 0.9793 5.596 1.624
WSB/EiJ m 2.45 0.9793 4.436 0.464
XEB2_AG f 1.41 0.7996 3.0316 -0.2116
XEB2_AG m 2.2533 0.7996 3.8749 0.6318


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 6.455 0.6924 7.8593 5.0507
A/J both 13.3 0.6924 14.7043 11.8957
CAST/EiJ both 12.75 0.6924 14.1543 11.3457
CC012/Geni both 3.6227 0.5057 4.6482 2.5971
DONNELL_HA both 15.0833 0.6321 16.3653 13.8014
LAT_HD both 6.58 0.5793 7.7549 5.4051
NOD/ShiLtJ both 2.895 0.6924 4.2993 1.4907
NZO/HlLtJ both 6.26 0.6924 7.6643 4.8557
PEF_EC both 18.0667 0.5654 19.2133 16.92
PWK/PhJ both 10.7225 0.6924 12.1268 9.3182
WSB/EiJ both 3.03 0.6924 4.4343 1.6257
XEB2_AG both 1.8317 0.5654 2.9783 0.685




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA