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Project measure / variable:   Bolivar1   center_time_pct_d2

ID, description, units MPD:63450   center_time_pct_d2   percentage of time spent in center, 5 min test in dark   [%]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in center, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means8.4188   % 10.739   %
Median of the strain means8.8375   % 9.268   %
SD of the strain means± 2.7296 ± 5.9973
Coefficient of variation (CV)0.3242 0.5585
Min–max range of strain means4.1111   –   11.961   % 3.5   –   22.992   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 322.944 322.944 8.2402 0.0045
strain 9 2650.5139 294.5015 7.5145 < 0.0001
sex:strain 9 2038.7287 226.5254 5.78 < 0.0001
Residuals 220 8622.0576 39.1912


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 9.1944 4.6328   12 1.3374 0.5039 2.4, 17.83333333 0.28
129S1/SvImJ m 7.1639 10.48   12 3.0252 1.4628 0.166666667, 30.03333333 -0.6
A/J f 4.1111 5.2779   12 1.5236 1.2838 -1.58
A/J m 5.0028 7.7187   12 2.2282 1.5429 -0.96
B6129SF1/J f 5.1694 5.0393   12 1.4547 0.9748 -1.19
B6129SF1/J m 8.9833 4.5746   12 1.3206 0.5092 1.066666667, 16.6 -0.29
B6C3F1/J f 10.583 4.9968   12 1.4424 0.4721 0.6, 19.33333333 0.79
B6C3F1/J m 10.464 4.3088   12 1.2439 0.4118 4.366666667, 17.56666667 -0.05
BALB/cByJ f 11.961 8.5108   12 2.4569 0.7115 0.733333333, 26.73333333 1.3
BALB/cByJ m 17.619 6.7555   12 1.9501 0.3834 6.866666667, 28.6 1.15
C3H/HeJ f 9.7444 5.1709   12 1.4927 0.5307 0.133333333, 15.7 0.49
C3H/HeJ m 9.5528 2.6368   12 0.76117 0.276 5.8, 15.53333333 -0.2
C57BL/6J f 8.0333 2.3274   12 0.67187 0.2897 4.433333333, 12.43333333 -0.14
C57BL/6J m 7.6361 4.51   12 1.3019 0.5906 2.366666667, 15.13333333 -0.52
CBA/J f 5.4389 5.3529   12 1.5452 0.9842 0.066666667, 18.93333333 -1.09
CBA/J m 22.992 9.5355   12 2.7527 0.4147 14.16666667, 40.63333333 2.04
DBA/2J f 8.4806 5.6717   12 1.6373 0.6688 0.6, 17.13333333 0.02
DBA/2J m 3.5 3.8565   12 1.1133 1.1019 -1.21
FVB/NJ f 11.472 9.0645   12 2.6167 0.7901 1.12
FVB/NJ m 14.475 6.996   12 2.0196 0.4833 1.4, 28.73333333 0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 9.1944 1.8072 12.7561 5.6328
129S1/SvImJ m 7.1639 1.8072 10.7255 3.6023
A/J f 4.1111 1.8072 7.6727 0.5495
A/J m 5.0028 1.8072 8.5644 1.4412
B6129SF1/J f 5.1694 1.8072 8.7311 1.6078
B6129SF1/J m 8.9833 1.8072 12.545 5.4217
B6C3F1/J f 10.5833 1.8072 14.145 7.0217
B6C3F1/J m 10.4639 1.8072 14.0255 6.9023
BALB/cByJ f 11.9611 1.8072 15.5227 8.3995
BALB/cByJ m 17.6194 1.8072 21.1811 14.0578
C3H/HeJ f 9.7444 1.8072 13.3061 6.1828
C3H/HeJ m 9.5528 1.8072 13.1144 5.9912
C57BL/6J f 8.0333 1.8072 11.595 4.4717
C57BL/6J m 7.6361 1.8072 11.1977 4.0745
CBA/J f 5.4389 1.8072 9.0005 1.8773
CBA/J m 22.9917 1.8072 26.5533 19.43
DBA/2J f 8.4806 1.8072 12.0422 4.9189
DBA/2J m 3.5 1.8072 7.0616 -0.0616
FVB/NJ f 11.4722 1.8072 15.0338 7.9106
FVB/NJ m 14.475 1.8072 18.0366 10.9134


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.1792 1.2779 10.6976 5.6607
A/J both 4.5569 1.2779 7.0754 2.0385
B6129SF1/J both 7.0764 1.2779 9.5948 4.5579
B6C3F1/J both 10.5236 1.2779 13.0421 8.0052
BALB/cByJ both 14.7903 1.2779 17.3087 12.2718
C3H/HeJ both 9.6486 1.2779 12.1671 7.1302
C57BL/6J both 7.8347 1.2779 10.3532 5.3163
CBA/J both 14.2153 1.2779 16.7337 11.6968
DBA/2J both 5.9903 1.2779 8.5087 3.4718
FVB/NJ both 12.9736 1.2779 15.4921 10.4552




  GWAS USING LINEAR MIXED MODELS