Project measure / variable:   Bolivar1   center_time_pct_d1

ID, description, units MPD:63449   center_time_pct_d1   percentage of time spent in center, 5 min test in dark   [%]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent in center, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means11.509   % 13.131   %
Median of the strain means11.672   % 12.706   %
SD of the strain means± 3.0626 ± 5.5309
Coefficient of variation (CV)0.2661 0.4212
Min–max range of strain means5.8028   –   15.469   % 4.65   –   22.436   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 157.9504 157.9504 5.4992 0.0199
strain 9 2397.5988 266.3999 9.275 < 0.0001
sex:strain 9 1919.287 213.2541 7.4247 < 0.0001
Residuals 220 6318.9103 28.7223


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 11.706 6.743   12 1.9465 0.576 1.833333333, 25.86666667 0.06
129S1/SvImJ m 9.7917 6.3091   12 1.8213 0.6443 0.133333333, 23.3 -0.6
A/J f 5.8028 4.5783   12 1.3216 0.789 1.3, 15.3 -1.86
A/J m 4.65 5.3189   12 1.5354 1.1438 0.266666667, 18.43333333 -1.53
B6129SF1/J f 11.639 7.4804   12 2.1594 0.6427 1.333333333, 22.3 0.04
B6129SF1/J m 11.861 4.3448   12 1.2542 0.3663 5.666666667, 21.83333333 -0.23
B6C3F1/J f 13.239 3.7245   12 1.0752 0.2813 8.333333333, 19.56666667 0.57
B6C3F1/J m 13.422 3.0972   12 0.89407 0.2307 6.433333333, 17.63333333 0.05
BALB/cByJ f 13.894 7.1771   12 2.0718 0.5165 3.866666667, 27.86666667 0.78
BALB/cByJ m 22.436 3.4699   12 1.0017 0.1547 16.73333333, 27.23333333 1.68
C3H/HeJ f 8.6861 4.3549   12 1.2571 0.5014 2.566666667, 16.16666667 -0.92
C3H/HeJ m 14.525 4.2877   12 1.2378 0.2952 7.8, 22.63333333 0.25
C57BL/6J f 15.469 5.4616   12 1.5766 0.3531 7.866666667, 27.26666667 1.29
C57BL/6J m 11.989 4.5164   12 1.3038 0.3767 6.6, 21.0 -0.21
CBA/J f 8.4583 4.7065   12 1.3586 0.5564 2.366666667, 16.73333333 -1.0
CBA/J m 19.817 7.5305   12 2.1739 0.38 8.133333333, 34.33333333 1.21
DBA/2J f 14.697 3.0369   12 0.87668 0.2066 10.9, 21.96666667 1.04
DBA/2J m 6.4056 5.0485   12 1.4574 0.7881 0.2, 19.83333333 -1.22
FVB/NJ f 11.494 7.6055   12 2.1955 0.6617 2.466666667, 30.66666667 0.0
FVB/NJ m 16.414 4.3686   12 1.2611 0.2662 7.333333333, 19.4 0.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 11.7056 1.5471 14.7546 8.6565
129S1/SvImJ m 9.7917 1.5471 12.8407 6.7426
A/J f 5.8028 1.5471 8.8518 2.7537
A/J m 4.65 1.5471 7.699 1.601
B6129SF1/J f 11.6389 1.5471 14.6879 8.5899
B6129SF1/J m 11.8611 1.5471 14.9101 8.8121
B6C3F1/J f 13.2389 1.5471 16.2879 10.1899
B6C3F1/J m 13.4222 1.5471 16.4713 10.3732
BALB/cByJ f 13.8944 1.5471 16.9435 10.8454
BALB/cByJ m 22.4361 1.5471 25.4851 19.3871
C3H/HeJ f 8.6861 1.5471 11.7351 5.6371
C3H/HeJ m 14.525 1.5471 17.574 11.476
C57BL/6J f 15.4694 1.5471 18.5185 12.4204
C57BL/6J m 11.9889 1.5471 15.0379 8.9399
CBA/J f 8.4583 1.5471 11.5074 5.4093
CBA/J m 19.8167 1.5471 22.8657 16.7676
DBA/2J f 14.6972 1.5471 17.7463 11.6482
DBA/2J m 6.4056 1.5471 9.4546 3.3565
FVB/NJ f 11.4944 1.5471 14.5435 8.4454
FVB/NJ m 16.4139 1.5471 19.4629 13.3649


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.7486 1.094 12.9046 8.5926
A/J both 5.2264 1.094 7.3824 3.0704
B6129SF1/J both 11.75 1.094 13.906 9.594
B6C3F1/J both 13.3306 1.094 15.4866 11.1746
BALB/cByJ both 18.1653 1.094 20.3213 16.0093
C3H/HeJ both 11.6056 1.094 13.7616 9.4496
C57BL/6J both 13.7292 1.094 15.8852 11.5732
CBA/J both 14.1375 1.094 16.2935 11.9815
DBA/2J both 10.5514 1.094 12.7074 8.3954
FVB/NJ both 13.9542 1.094 16.1102 11.7982




  GWAS USING LINEAR MIXED MODELS