Project measure / variable:   Bolivar1   margin_dist_d3

ID, description, units MPD:63442   margin_dist_d3   distance traveled in periphery, 5 min test in dark   [cm]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - distance traveled in periphery, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means852.5   cm 919.5   cm
Median of the strain means759.2   cm 963.7   cm
SD of the strain means± 234.7 ± 313.4
Coefficient of variation (CV)0.2753 0.3408
Min–max range of strain means598.6   –   1436.0   cm 387.0   –   1287.0   cm
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 269541.0375 269541.0375 2.597 0.1085
strain 9 5176780.0875 575197.7875 5.5419 < 0.0001
sex:strain 9 11376209.9208 1264023.3245 12.1786 < 0.0001
Residuals 220 22833991.9167 103790.8723


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 780.5 427.2   12 123.3 0.5473 115.0, 1476.0 -0.31
129S1/SvImJ m 387.0 279.5   12 80.67 0.7221 23.0, 1136.0 -1.7
A/J f 701.7 292.2   12 84.34 0.4164 203.0, 1148.0 -0.64
A/J m 897.4 446.2   12 128.8 0.4972 203.0, 1677.0 -0.07
B6129SF1/J f 598.6 384.4   12 111.0 0.6422 127.0, 1257.0 -1.08
B6129SF1/J m 1061.0 412.4   12 119.1 0.3887 386.0, 1801.0 0.45
B6C3F1/J f 957.2 230.2   12 66.45 0.2405 615.0, 1367.0 0.45
B6C3F1/J m 1191.0 341.2   12 98.5 0.2865 695.0, 2065.0 0.87
BALB/cByJ f 943.9 388.7   12 112.2 0.4118 181.0, 1829.0 0.39
BALB/cByJ m 1253.0 450.6   12 130.1 0.3596 605.0, 1867.0 1.06
C3H/HeJ f 733.2 152.0   12 43.869 0.2073 462.0, 993.0 -0.51
C3H/HeJ m 1030.0 220.9   12 63.78 0.2144 680.0, 1338.0 0.35
C57BL/6J f 900.5 273.7   12 79.0 0.3039 557.0, 1387.0 0.2
C57BL/6J m 848.5 221.8   12 64.02 0.2614 513.0, 1292.0 -0.23
CBA/J f 735.3 337.2   12 97.33 0.4585 46.0, 1348.0 -0.5
CBA/J m 797.8 190.2   12 54.9 0.2384 505.0, 1189.0 -0.39
DBA/2J f 1436.0 432.9   12 125.0 0.3015 610.0, 2170.0 2.49
DBA/2J m 442.4 239.1   12 69.01 0.5404 106.0, 905.0 -1.52
FVB/NJ f 737.9 197.7   12 57.07 0.2679 513.0, 1148.0 -0.49
FVB/NJ m 1287.0 244.7   12 70.63 0.1901 1010.0, 1847.0 1.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 780.5 93.0013 963.7875 597.2125
129S1/SvImJ m 387.0 93.0013 570.2875 203.7125
A/J f 701.6667 93.0013 884.9541 518.3792
A/J m 897.4167 93.0013 1080.7041 714.1292
B6129SF1/J f 598.5833 93.0013 781.8708 415.2959
B6129SF1/J m 1061.0833 93.0013 1244.3708 877.7959
B6C3F1/J f 957.1667 93.0013 1140.4541 773.8792
B6C3F1/J m 1190.8333 93.0013 1374.1208 1007.5459
BALB/cByJ f 943.9167 93.0013 1127.2041 760.6292
BALB/cByJ m 1253.0 93.0013 1436.2875 1069.7125
C3H/HeJ f 733.25 93.0013 916.5375 549.9625
C3H/HeJ m 1030.25 93.0013 1213.5375 846.9625
C57BL/6J f 900.5 93.0013 1083.7875 717.2125
C57BL/6J m 848.5 93.0013 1031.7875 665.2125
CBA/J f 735.3333 93.0013 918.6208 552.0459
CBA/J m 797.8333 93.0013 981.1208 614.5459
DBA/2J f 1436.1667 93.0013 1619.4541 1252.8792
DBA/2J m 442.4167 93.0013 625.7041 259.1292
FVB/NJ f 737.9167 93.0013 921.2041 554.6292
FVB/NJ m 1286.9167 93.0013 1470.2041 1103.6292


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 583.75 65.7618 713.3538 454.1462
A/J both 799.5417 65.7618 929.1455 669.9379
B6129SF1/J both 829.8333 65.7618 959.4371 700.2295
B6C3F1/J both 1074.0 65.7618 1203.6038 944.3962
BALB/cByJ both 1098.4583 65.7618 1228.0621 968.8545
C3H/HeJ both 881.75 65.7618 1011.3538 752.1462
C57BL/6J both 874.5 65.7618 1004.1038 744.8962
CBA/J both 766.5833 65.7618 896.1871 636.9795
DBA/2J both 939.2917 65.7618 1068.8955 809.6879
FVB/NJ both 1012.4167 65.7618 1142.0205 882.8129




  GWAS USING LINEAR MIXED MODELS