Project measure / variable:   Bolivar1   cc_revs_d3

ID, description, units MPD:63436   cc_revs_d3   number of counter-clockwise revolution episodes, 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of counter-clockwise revolution episodes, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means3.425   n 4.4833   n
Median of the strain means3.2084   n 4.5417   n
SD of the strain means± 1.0675 ± 1.5584
Coefficient of variation (CV)0.3117 0.3476
Min–max range of strain means2.25   –   5.3333   n 1.8333   –   6.5   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 67.2042 67.2042 11.0342 0.001
strain 9 149.9542 16.6616 2.7357 0.0048
sex:strain 9 235.4208 26.1579 4.2948 < 0.0001
Residuals 220 1339.9167 6.0905


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.4167 2.1088   12 0.60875 0.6172 -0.01
129S1/SvImJ m 1.8333 2.7907   12 0.8056 1.5222 -1.7
A/J f 3.0 2.2563   12 0.65134 0.7521 -0.4
A/J m 3.8333 2.4433   12 0.70532 0.6374 -0.42
B6129SF1/J f 2.4167 1.3114   12 0.37856 0.5426 -0.94
B6129SF1/J m 5.5833 2.5391   12 0.73297 0.4548 1.0, 10.0 0.71
B6C3F1/J f 4.25 2.1794   12 0.62915 0.5128 1.0, 8.0 0.77
B6C3F1/J m 5.4167 3.0588   12 0.88299 0.5647 0.6
BALB/cByJ f 4.5 2.7798   12 0.80246 0.6177 1.01
BALB/cByJ m 6.25 3.4411   12 0.99335 0.5506 1.0, 13.0 1.13
C3H/HeJ f 2.6667 1.4355   12 0.41439 0.5383 1.0, 5.0 -0.71
C3H/HeJ m 4.1667 2.0375   12 0.58818 0.489 2.0, 8.0 -0.2
C57BL/6J f 4.0833 2.6785   12 0.77321 0.656 1.0, 11.0 0.62
C57BL/6J m 4.9167 1.8809   12 0.54298 0.3826 2.0, 9.0 0.28
CBA/J f 2.3333 2.2293   12 0.64354 0.9554 -1.02
CBA/J m 4.0 2.5584   12 0.73855 0.6396 1.0, 9.0 -0.31
DBA/2J f 5.3333 2.6054   12 0.7521 0.4885 1.0, 10.0 1.79
DBA/2J m 2.3333 3.0251   12 0.87328 1.2965 -1.38
FVB/NJ f 2.25 1.2154   12 0.35086 0.5402 1.0, 4.0 -1.1
FVB/NJ m 6.5 3.2891   12 0.94948 0.506 3.0, 14.0 1.29


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.4167 0.7124 4.8207 2.0126
129S1/SvImJ m 1.8333 0.7124 3.2374 0.4293
A/J f 3.0 0.7124 4.404 1.596
A/J m 3.8333 0.7124 5.2374 2.4293
B6129SF1/J f 2.4167 0.7124 3.8207 1.0126
B6129SF1/J m 5.5833 0.7124 6.9874 4.1793
B6C3F1/J f 4.25 0.7124 5.654 2.846
B6C3F1/J m 5.4167 0.7124 6.8207 4.0126
BALB/cByJ f 4.5 0.7124 5.904 3.096
BALB/cByJ m 6.25 0.7124 7.654 4.846
C3H/HeJ f 2.6667 0.7124 4.0707 1.2626
C3H/HeJ m 4.1667 0.7124 5.5707 2.7626
C57BL/6J f 4.0833 0.7124 5.4874 2.6793
C57BL/6J m 4.9167 0.7124 6.3207 3.5126
CBA/J f 2.3333 0.7124 3.7374 0.9293
CBA/J m 4.0 0.7124 5.404 2.596
DBA/2J f 5.3333 0.7124 6.7374 3.9293
DBA/2J m 2.3333 0.7124 3.7374 0.9293
FVB/NJ f 2.25 0.7124 3.654 0.846
FVB/NJ m 6.5 0.7124 7.904 5.096


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.625 0.5038 3.6178 1.6322
A/J both 3.4167 0.5038 4.4095 2.4239
B6129SF1/J both 4.0 0.5038 4.9928 3.0072
B6C3F1/J both 4.8333 0.5038 5.8261 3.8405
BALB/cByJ both 5.375 0.5038 6.3678 4.3822
C3H/HeJ both 3.4167 0.5038 4.4095 2.4239
C57BL/6J both 4.5 0.5038 5.4928 3.5072
CBA/J both 3.1667 0.5038 4.1595 2.1739
DBA/2J both 3.8333 0.5038 4.8261 2.8405
FVB/NJ both 4.375 0.5038 5.3678 3.3822




  GWAS USING LINEAR MIXED MODELS