Project measure / variable:   Bolivar1   c_revs_d3

ID, description, units MPD:63433   c_revs_d3   number of clockwise revolution episodes, 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of clockwise revolution episodes, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means3.6084   n 4.125   n
Median of the strain means3.2916   n 4.0833   n
SD of the strain means± 1.2626 ± 1.5881
Coefficient of variation (CV)0.3499 0.385
Min–max range of strain means2.4167   –   6.0   n 1.4167   –   6.8333   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 16.0167 16.0167 2.2542 0.1347
strain 9 264.4833 29.387 4.1359 0.0001
sex:strain 9 180.0667 20.0074 2.8158 0.0038
Residuals 220 1563.1667 7.1053


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 3.4167 2.7455   12 0.79256 0.8036 -0.15
129S1/SvImJ m 1.4167 1.379   12 0.39807 0.9734 -1.71
A/J f 2.4167 2.2344   12 0.64501 0.9246 -0.94
A/J m 3.5833 4.8889   12 1.4113 1.3643 -0.34
B6129SF1/J f 2.75 3.3063   12 0.95446 1.2023 -0.68
B6129SF1/J m 4.1667 2.6912   12 0.77688 0.6459 1.0, 9.0 0.03
B6C3F1/J f 3.3333 1.8749   12 0.54123 0.5625 -0.22
B6C3F1/J m 5.3333 2.8069   12 0.81029 0.5263 2.0, 11.0 0.76
BALB/cByJ f 4.4167 3.2879   12 0.94915 0.7444 0.64
BALB/cByJ m 5.1667 2.6572   12 0.76706 0.5143 1.0, 10.0 0.66
C3H/HeJ f 2.6667 1.3707   12 0.39568 0.514 1.0, 5.0 -0.75
C3H/HeJ m 5.25 2.2613   12 0.65279 0.4307 2.0, 10.0 0.71
C57BL/6J f 3.25 1.2154   12 0.35086 0.374 1.0, 5.0 -0.28
C57BL/6J m 2.5 2.0226   12 0.58387 0.809 -1.02
CBA/J f 2.4167 1.8809   12 0.54298 0.7783 -0.94
CBA/J m 4.0 1.8586   12 0.53654 0.4647 1.0, 7.0 -0.08
DBA/2J f 6.0 3.6927   12 1.066 0.6155 1.89
DBA/2J m 3.0 3.1623   12 0.91287 1.0541 -0.71
FVB/NJ f 5.4167 2.7455   12 0.79256 0.5069 1.0, 11.0 1.43
FVB/NJ m 6.8333 2.3677   12 0.6835 0.3465 3.0, 10.0 1.71


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 3.4167 0.7695 4.9332 1.9002
129S1/SvImJ m 1.4167 0.7695 2.9332 -0.0998
A/J f 2.4167 0.7695 3.9332 0.9002
A/J m 3.5833 0.7695 5.0998 2.0668
B6129SF1/J f 2.75 0.7695 4.2665 1.2335
B6129SF1/J m 4.1667 0.7695 5.6832 2.6502
B6C3F1/J f 3.3333 0.7695 4.8498 1.8168
B6C3F1/J m 5.3333 0.7695 6.8498 3.8168
BALB/cByJ f 4.4167 0.7695 5.9332 2.9002
BALB/cByJ m 5.1667 0.7695 6.6832 3.6502
C3H/HeJ f 2.6667 0.7695 4.1832 1.1502
C3H/HeJ m 5.25 0.7695 6.7665 3.7335
C57BL/6J f 3.25 0.7695 4.7665 1.7335
C57BL/6J m 2.5 0.7695 4.0165 0.9835
CBA/J f 2.4167 0.7695 3.9332 0.9002
CBA/J m 4.0 0.7695 5.5165 2.4835
DBA/2J f 6.0 0.7695 7.5165 4.4835
DBA/2J m 3.0 0.7695 4.5165 1.4835
FVB/NJ f 5.4167 0.7695 6.9332 3.9002
FVB/NJ m 6.8333 0.7695 8.3498 5.3168


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.4167 0.5441 3.489 1.3443
A/J both 3.0 0.5441 4.0723 1.9277
B6129SF1/J both 3.4583 0.5441 4.5307 2.386
B6C3F1/J both 4.3333 0.5441 5.4057 3.261
BALB/cByJ both 4.7917 0.5441 5.864 3.7193
C3H/HeJ both 3.9583 0.5441 5.0307 2.886
C57BL/6J both 2.875 0.5441 3.9473 1.8027
CBA/J both 3.2083 0.5441 4.2807 2.136
DBA/2J both 4.5 0.5441 5.5723 3.4277
FVB/NJ both 6.125 0.5441 7.1973 5.0527




  GWAS USING LINEAR MIXED MODELS