Project measure / variable:   Bolivar1   c_revs_d1

ID, description, units MPD:63431   c_revs_d1   number of clockwise revolution episodes, 5 min test in dark   [n]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of clockwise revolution episodes, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means4.3333   n 4.6417   n
Median of the strain means4.1667   n 4.8333   n
SD of the strain means± 1.4202 ± 2.2727
Coefficient of variation (CV)0.3277 0.4896
Min–max range of strain means2.5   –   7.1667   n 1.3333   –   8.5   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.7042 5.7042 1.1041 0.2945
strain 9 527.7542 58.6394 11.3504 < 0.0001
sex:strain 9 247.9208 27.5468 5.332 < 0.0001
Residuals 220 1136.5833 5.1663


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 4.25 2.1373   12 0.61699 0.5029 1.0, 8.0 -0.06
129S1/SvImJ m 2.1667 1.7495   12 0.50503 0.8074 -1.09
A/J f 2.5 1.7838   12 0.51493 0.7135 -1.29
A/J m 1.3333 0.98473   12 0.28427 0.7385 -1.46
B6129SF1/J f 5.75 3.1945   12 0.92216 0.5556 2.0, 12.0 1.0
B6129SF1/J m 6.4167 2.7455   12 0.79256 0.4279 2.0, 10.0 0.78
B6C3F1/J f 7.1667 3.639   12 1.0505 0.5078 3.0, 15.0 2.0
B6C3F1/J m 6.0 2.6285   12 0.75879 0.4381 3.0, 12.0 0.6
BALB/cByJ f 3.5833 1.5643   12 0.45157 0.4365 1.0, 6.0 -0.53
BALB/cByJ m 5.1667 2.4058   12 0.69449 0.4656 2.0, 11.0 0.23
C3H/HeJ f 3.8333 2.4058   12 0.69449 0.6276 1.0, 9.0 -0.35
C3H/HeJ m 6.4167 2.8431   12 0.82074 0.4431 2.0, 11.0 0.78
C57BL/6J f 4.9167 1.8809   12 0.54298 0.3826 3.0, 8.0 0.41
C57BL/6J m 4.5 2.4309   12 0.70173 0.5402 1.0, 9.0 -0.06
CBA/J f 2.5 1.7838   12 0.51493 0.7135 1.0, 6.0 -1.29
CBA/J m 3.4167 1.2401   12 0.35799 0.363 2.0, 6.0 -0.54
DBA/2J f 4.75 2.4909   12 0.71906 0.5244 0.29
DBA/2J m 2.5 2.0671   12 0.59671 0.8268 -0.94
FVB/NJ f 4.0833 1.4434   12 0.41667 0.3535 2.0, 6.0 -0.18
FVB/NJ m 8.5 2.195   12 0.63365 0.2582 5.0, 12.0 1.7


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 4.25 0.6561 5.5431 2.9569
129S1/SvImJ m 2.1667 0.6561 3.4598 0.8735
A/J f 2.5 0.6561 3.7931 1.2069
A/J m 1.3333 0.6561 2.6265 0.0402
B6129SF1/J f 5.75 0.6561 7.0431 4.4569
B6129SF1/J m 6.4167 0.6561 7.7098 5.1235
B6C3F1/J f 7.1667 0.6561 8.4598 5.8735
B6C3F1/J m 6.0 0.6561 7.2931 4.7069
BALB/cByJ f 3.5833 0.6561 4.8765 2.2902
BALB/cByJ m 5.1667 0.6561 6.4598 3.8735
C3H/HeJ f 3.8333 0.6561 5.1265 2.5402
C3H/HeJ m 6.4167 0.6561 7.7098 5.1235
C57BL/6J f 4.9167 0.6561 6.2098 3.6235
C57BL/6J m 4.5 0.6561 5.7931 3.2069
CBA/J f 2.5 0.6561 3.7931 1.2069
CBA/J m 3.4167 0.6561 4.7098 2.1235
DBA/2J f 4.75 0.6561 6.0431 3.4569
DBA/2J m 2.5 0.6561 3.7931 1.2069
FVB/NJ f 4.0833 0.6561 5.3765 2.7902
FVB/NJ m 8.5 0.6561 9.7931 7.2069


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 3.2083 0.464 4.1227 2.294
A/J both 1.9167 0.464 2.831 1.0023
B6129SF1/J both 6.0833 0.464 6.9977 5.169
B6C3F1/J both 6.5833 0.464 7.4977 5.669
BALB/cByJ both 4.375 0.464 5.2894 3.4606
C3H/HeJ both 5.125 0.464 6.0394 4.2106
C57BL/6J both 4.7083 0.464 5.6227 3.794
CBA/J both 2.9583 0.464 3.8727 2.044
DBA/2J both 3.625 0.464 4.5394 2.7106
FVB/NJ both 6.2917 0.464 7.206 5.3773




  GWAS USING LINEAR MIXED MODELS