Project measure / variable:   Bolivar1   stereo_time_pct_d1

ID, description, units MPD:63428   stereo_time_pct_d1   percentage of time spent moving stereotypically, 5 min test in dark   [%]  day 1  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - percentage of time spent moving stereotypically, 5 min test in dark day 1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means18.713   % 20.315   %
Median of the strain means17.991   % 19.704   %
SD of the strain means± 2.1445 ± 2.5853
Coefficient of variation (CV)0.1146 0.1273
Min–max range of strain means16.694   –   23.686   % 15.414   –   24.817   %
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 153.9202 153.9202 4.0103 0.0465
strain 9 640.5867 71.1763 1.8545 0.0601
sex:strain 9 577.889 64.2099 1.673 0.0968
Residuals 220 8443.8474 38.3811


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 19.789 9.1874   12 2.6522 0.4643 9.6, 41.2 0.5
129S1/SvImJ m 20.475 10.735   12 3.0988 0.5243 4.933333333, 42.96666667 0.06
A/J f 17.058 7.8687   12 2.2715 0.4613 7.533333333, 32.6 -0.77
A/J m 15.414 3.0841   12 0.89029 0.2001 9.533333333, 19.53333333 -1.9
B6129SF1/J f 23.686 4.5538   12 1.3146 0.1923 14.8, 30.9 2.32
B6129SF1/J m 19.447 4.5647   12 1.3177 0.2347 13.0, 31.03333333 -0.34
B6C3F1/J f 17.789 4.5725   12 1.32 0.257 9.766666667, 27.2 -0.43
B6C3F1/J m 19.486 3.785   12 1.0926 0.1942 14.63333333, 24.9 -0.32
BALB/cByJ f 20.347 5.8383   12 1.6854 0.2869 13.7, 32.8 0.76
BALB/cByJ m 22.358 4.9054   12 1.4161 0.2194 15.63333333, 28.26666667 0.79
C3H/HeJ f 19.094 4.631   12 1.3369 0.2425 13.03333333, 27.56666667 0.18
C3H/HeJ m 19.597 6.5993   12 1.9051 0.3367 6.966666667, 30.56666667 -0.28
C57BL/6J f 17.703 4.301   12 1.2416 0.243 10.83333333, 27.43333333 -0.47
C57BL/6J m 18.772 3.8515   12 1.1118 0.2052 13.83333333, 24.33333333 -0.6
CBA/J f 16.694 2.7708   12 0.79986 0.166 13.36666667, 21.76666667 -0.94
CBA/J m 22.975 2.8795   12 0.83125 0.1253 17.76666667, 27.4 1.03
DBA/2J f 18.192 6.6477   12 1.919 0.3654 12.83333333, 36.86666667 -0.24
DBA/2J m 24.817 12.739   12 3.6773 0.5133 5.2, 50.66666667 1.74
FVB/NJ f 16.783 3.2395   12 0.93516 0.193 11.3, 21.23333333 -0.9
FVB/NJ m 19.811 5.5083   12 1.5901 0.278 6.866666667, 27.7 -0.2


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 19.7889 1.7884 23.3135 16.2643
129S1/SvImJ m 20.475 1.7884 23.9996 16.9504
A/J f 17.0583 1.7884 20.583 13.5337
A/J m 15.4139 1.7884 18.9385 11.8893
B6129SF1/J f 23.6861 1.7884 27.2107 20.1615
B6129SF1/J m 19.4472 1.7884 22.9718 15.9226
B6C3F1/J f 17.7889 1.7884 21.3135 14.2643
B6C3F1/J m 19.4861 1.7884 23.0107 15.9615
BALB/cByJ f 20.3472 1.7884 23.8718 16.8226
BALB/cByJ m 22.3583 1.7884 25.883 18.8337
C3H/HeJ f 19.0944 1.7884 22.6191 15.5698
C3H/HeJ m 19.5972 1.7884 23.1218 16.0726
C57BL/6J f 17.7028 1.7884 21.2274 14.1782
C57BL/6J m 18.7722 1.7884 22.2968 15.2476
CBA/J f 16.6944 1.7884 20.2191 13.1698
CBA/J m 22.975 1.7884 26.4996 19.4504
DBA/2J f 18.1917 1.7884 21.7163 14.667
DBA/2J m 24.8167 1.7884 28.3413 21.292
FVB/NJ f 16.7833 1.7884 20.308 13.2587
FVB/NJ m 19.8111 1.7884 23.3357 16.2865


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 20.1319 1.2646 22.6242 17.6397
A/J both 16.2361 1.2646 18.7284 13.7438
B6129SF1/J both 21.5667 1.2646 24.0589 19.0744
B6C3F1/J both 18.6375 1.2646 21.1298 16.1452
BALB/cByJ both 21.3528 1.2646 23.8451 18.8605
C3H/HeJ both 19.3458 1.2646 21.8381 16.8536
C57BL/6J both 18.2375 1.2646 20.7298 15.7452
CBA/J both 19.8347 1.2646 22.327 17.3424
DBA/2J both 21.5042 1.2646 23.9964 19.0119
FVB/NJ both 18.2972 1.2646 20.7895 15.8049




  GWAS USING LINEAR MIXED MODELS