Project measure / variable:   Bolivar1   vert_act_d3

ID, description, units MPD:63415   vert_act_d3   vertical activity (beam breaks), 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - vertical activity (beam breaks), 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means30.95   n 40.03   n
Median of the strain means29.125   n 34.042   n
SD of the strain means± 15.152 ± 39.781
Coefficient of variation (CV)0.4896 0.9938
Min–max range of strain means11.333   –   63.75   n 0.5   –   142.8   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4941.3375 4941.3375 5.0107 0.0262
strain 9 98092.2542 10899.1394 11.0521 < 0.0001
sex:strain 9 97491.1208 10832.3468 10.9844 < 0.0001
Residuals 220 216955.25 986.1602


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 22.917 23.785   12 6.8661 1.0379 -0.53
129S1/SvImJ m 3.4167 11.836   12 3.4167 3.4641 -0.92
A/J f 11.333 13.069   12 3.7726 1.1531 -1.29
A/J m 25.667 30.44   12 8.7873 1.186 1.0, 76.0 -0.36
B6129SF1/J f 16.0 23.006   12 6.6412 1.4379 -0.99
B6129SF1/J m 47.5 32.399   12 9.3529 0.6821 4.0, 102.0 0.19
B6C3F1/J f 39.5 20.011   12 5.7768 0.5066 3.0, 76.0 0.56
B6C3F1/J m 48.917 25.411   12 7.3355 0.5195 4.0, 92.0 0.22
BALB/cByJ f 39.667 45.618   12 13.169 1.15 1.0, 129.0 0.58
BALB/cByJ m 41.167 30.721   12 8.8684 0.7463 1.0, 95.0 0.03
C3H/HeJ f 20.25 13.011   12 3.7561 0.6425 -0.71
C3H/HeJ m 38.917 15.588   12 4.4999 0.4006 12.0, 63.0 -0.03
C57BL/6J f 29.167 13.49   12 3.8941 0.4625 12.0, 61.0 -0.12
C57BL/6J m 29.167 17.167   12 4.9556 0.5886 8.0, 70.0 -0.27
CBA/J f 29.083 54.49   12 15.731 1.8737 1.0, 168.0 -0.12
CBA/J m 22.25 16.477   12 4.7564 0.7405 -0.45
DBA/2J f 63.75 50.95   12 14.707 0.7992 1.0, 135.0 2.16
DBA/2J m 0.5 1.446   12 0.41742 2.892 -0.99
FVB/NJ f 37.833 40.167   12 11.595 1.0617 0.45
FVB/NJ m 142.8 62.68   12 18.095 0.4391 22.0, 276.0 2.58


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 22.9167 9.0653 40.7826 5.0507
129S1/SvImJ m 3.4167 9.0653 21.2826 -14.4493
A/J f 11.3333 9.0653 29.1993 -6.5326
A/J m 25.6667 9.0653 43.5326 7.8007
B6129SF1/J f 16.0 9.0653 33.866 -1.866
B6129SF1/J m 47.5 9.0653 65.366 29.634
B6C3F1/J f 39.5 9.0653 57.366 21.634
B6C3F1/J m 48.9167 9.0653 66.7826 31.0507
BALB/cByJ f 39.6667 9.0653 57.5326 21.8007
BALB/cByJ m 41.1667 9.0653 59.0326 23.3007
C3H/HeJ f 20.25 9.0653 38.116 2.384
C3H/HeJ m 38.9167 9.0653 56.7826 21.0507
C57BL/6J f 29.1667 9.0653 47.0326 11.3007
C57BL/6J m 29.1667 9.0653 47.0326 11.3007
CBA/J f 29.0833 9.0653 46.9493 11.2174
CBA/J m 22.25 9.0653 40.116 4.384
DBA/2J f 63.75 9.0653 81.616 45.884
DBA/2J m 0.5 9.0653 18.366 -17.366
FVB/NJ f 37.8333 9.0653 55.6993 19.9674
FVB/NJ m 142.75 9.0653 160.616 124.884


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 13.1667 6.4101 25.7998 0.5335
A/J both 18.5 6.4101 31.1332 5.8668
B6129SF1/J both 31.75 6.4101 44.3832 19.1168
B6C3F1/J both 44.2083 6.4101 56.8415 31.5752
BALB/cByJ both 40.4167 6.4101 53.0498 27.7835
C3H/HeJ both 29.5833 6.4101 42.2165 16.9502
C57BL/6J both 29.1667 6.4101 41.7998 16.5335
CBA/J both 25.6667 6.4101 38.2998 13.0335
DBA/2J both 32.125 6.4101 44.7582 19.4918
FVB/NJ both 90.2917 6.4101 102.9248 77.6585




  GWAS USING LINEAR MIXED MODELS