Project measure / variable:   Bolivar1   horiz_bouts_d3

ID, description, units MPD:63406   horiz_bouts_d3   number of horizontal movement episodes, 5 min test in dark   [n]  day 3  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of horizontal movement episodes, 5 min test in dark day 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means58.2   n 61.17   n
Median of the strain means57.5   n 61.16   n
SD of the strain means± 5.1883 ± 9.6863
Coefficient of variation (CV)0.0891 0.1584
Min–max range of strain means50.83   –   69.0   n 43.583   –   75.25   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 528.0667 528.0667 2.8507 0.0928
strain 9 7258.6 806.5111 4.3538 < 0.0001
sex:strain 9 5782.1 642.4556 3.4682 0.0005
Residuals 220 40753.1667 185.2417


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 53.75 16.125   12 4.655 0.3 20.0, 76.0 -0.86
129S1/SvImJ m 43.583 18.451   12 5.3264 0.4234 8.0, 68.0 -1.82
A/J f 58.0 15.07   12 4.3502 0.2598 30.0, 79.0 -0.04
A/J m 61.25 11.593   12 3.3465 0.1893 40.0, 80.0 0.01
B6129SF1/J f 50.83 17.811   12 5.1417 0.3504 27.0, 83.0 -1.42
B6129SF1/J m 57.42 12.354   12 3.5664 0.2152 26.0, 75.0 -0.39
B6C3F1/J f 62.75 6.107   12 1.7629 0.0973 52.0, 71.0 0.88
B6C3F1/J m 61.08 7.9368   12 2.2912 0.1299 47.0, 72.0 -0.01
BALB/cByJ f 61.42 20.088   12 5.799 0.3271 28.0, 86.0 0.62
BALB/cByJ m 64.83 10.329   12 2.9818 0.1593 46.0, 79.0 0.38
C3H/HeJ f 54.17 12.467   12 3.5989 0.2302 39.0, 76.0 -0.78
C3H/HeJ m 65.33 6.2861   12 1.8146 0.0962 55.0, 78.0 0.43
C57BL/6J f 56.58 8.898   12 2.5686 0.1573 45.0, 68.0 -0.31
C57BL/6J m 51.25 11.371   12 3.2825 0.2219 36.0, 68.0 -1.02
CBA/J f 57.0 16.82   12 4.8555 0.2951 20.0, 76.0 -0.23
CBA/J m 74.5 8.5759   12 2.4756 0.1151 60.0, 88.0 1.38
DBA/2J f 69.0 10.322   12 2.9797 0.1496 52.0, 80.0 2.08
DBA/2J m 57.17 21.804   12 6.2943 0.3814 21.0, 88.0 -0.41
FVB/NJ f 58.5 15.745   12 4.5452 0.2691 25.0, 77.0 0.06
FVB/NJ m 75.25 8.5294   12 2.4622 0.1133 58.0, 86.0 1.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 53.75 3.929 61.4932 46.0068
129S1/SvImJ m 43.5833 3.929 51.3266 35.8401
A/J f 58.0 3.929 65.7432 50.2568
A/J m 61.25 3.929 68.9932 53.5068
B6129SF1/J f 50.8333 3.929 58.5766 43.0901
B6129SF1/J m 57.4167 3.929 65.1599 49.6734
B6C3F1/J f 62.75 3.929 70.4932 55.0068
B6C3F1/J m 61.0833 3.929 68.8266 53.3401
BALB/cByJ f 61.4167 3.929 69.1599 53.6734
BALB/cByJ m 64.8333 3.929 72.5766 57.0901
C3H/HeJ f 54.1667 3.929 61.9099 46.4234
C3H/HeJ m 65.3333 3.929 73.0766 57.5901
C57BL/6J f 56.5833 3.929 64.3266 48.8401
C57BL/6J m 51.25 3.929 58.9932 43.5068
CBA/J f 57.0 3.929 64.7432 49.2568
CBA/J m 74.5 3.929 82.2432 66.7568
DBA/2J f 69.0 3.929 76.7432 61.2568
DBA/2J m 57.1667 3.929 64.9099 49.4234
FVB/NJ f 58.5 3.929 66.2432 50.7568
FVB/NJ m 75.25 3.929 82.9932 67.5068


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 48.6667 2.7782 54.142 43.1914
A/J both 59.625 2.7782 65.1003 54.1497
B6129SF1/J both 54.125 2.7782 59.6003 48.6497
B6C3F1/J both 61.9167 2.7782 67.392 56.4414
BALB/cByJ both 63.125 2.7782 68.6003 57.6497
C3H/HeJ both 59.75 2.7782 65.2253 54.2747
C57BL/6J both 53.9167 2.7782 59.392 48.4414
CBA/J both 65.75 2.7782 71.2253 60.2747
DBA/2J both 63.0833 2.7782 68.5586 57.608
FVB/NJ both 66.875 2.7782 72.3503 61.3997




  GWAS USING LINEAR MIXED MODELS