Project measure / variable:   Bolivar1   horiz_bouts_d2

ID, description, units MPD:63405   horiz_bouts_d2   number of horizontal movement episodes, 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - number of horizontal movement episodes, 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means63.55   n 65.03   n
Median of the strain means63.0   n 64.41   n
SD of the strain means± 4.2015 ± 8.1844
Coefficient of variation (CV)0.0661 0.1258
Min–max range of strain means57.67   –   70.92   n 55.67   –   79.5   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 132.0167 132.0167 0.8457 0.3588
strain 9 5706.3333 634.037 4.0614 0.0001
sex:strain 9 3436.5667 381.8407 2.4459 0.0113
Residuals 220 34344.6667 156.1121


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 64.0 9.9453   12 2.871 0.1554 44.0, 76.0 0.11
129S1/SvImJ m 56.17 15.782   12 4.5558 0.281 20.0, 82.0 -1.08
A/J f 61.83 16.073   12 4.6398 0.2599 36.0, 84.0 -0.41
A/J m 64.83 10.125   12 2.9228 0.1562 41.0, 74.0 -0.02
B6129SF1/J f 62.0 14.168   12 4.0899 0.2285 30.0, 77.0 -0.37
B6129SF1/J m 60.5 12.457   12 3.5961 0.2059 33.0, 77.0 -0.55
B6C3F1/J f 68.0 5.1522   12 1.4873 0.0758 60.0, 77.0 1.06
B6C3F1/J m 64.0 7.6396   12 2.2054 0.1194 47.0, 73.0 -0.13
BALB/cByJ f 65.5 16.616   12 4.7966 0.2537 36.0, 86.0 0.46
BALB/cByJ m 67.25 6.7302   12 1.9428 0.1001 60.0, 79.0 0.27
C3H/HeJ f 59.42 8.1515   12 2.3531 0.1372 39.0, 70.0 -0.98
C3H/HeJ m 57.33 6.6515   12 1.9201 0.116 47.0, 70.0 -0.94
C57BL/6J f 57.67 8.3376   12 2.4069 0.1446 43.0, 71.0 -1.4
C57BL/6J m 55.67 9.9666   12 2.8771 0.179 40.0, 74.0 -1.14
CBA/J f 66.5 14.848   12 4.2862 0.2233 38.0, 89.0 0.7
CBA/J m 76.33 9.5759   12 2.7643 0.1254 57.0, 94.0 1.38
DBA/2J f 70.92 10.664   12 3.0784 0.1504 55.0, 92.0 1.75
DBA/2J m 68.75 21.55   12 6.2208 0.3134 31.0, 101.0 0.45
FVB/NJ f 59.67 18.797   12 5.4263 0.315 31.0, 82.0 -0.92
FVB/NJ m 79.5 11.318   12 3.2671 0.1424 48.0, 89.0 1.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 64.0 3.6068 71.1084 56.8916
129S1/SvImJ m 56.1667 3.6068 63.2751 49.0583
A/J f 61.8333 3.6068 68.9417 54.7249
A/J m 64.8333 3.6068 71.9417 57.7249
B6129SF1/J f 62.0 3.6068 69.1084 54.8916
B6129SF1/J m 60.5 3.6068 67.6084 53.3916
B6C3F1/J f 68.0 3.6068 75.1084 60.8916
B6C3F1/J m 64.0 3.6068 71.1084 56.8916
BALB/cByJ f 65.5 3.6068 72.6084 58.3916
BALB/cByJ m 67.25 3.6068 74.3584 60.1416
C3H/HeJ f 59.4167 3.6068 66.5251 52.3083
C3H/HeJ m 57.3333 3.6068 64.4417 50.2249
C57BL/6J f 57.6667 3.6068 64.7751 50.5583
C57BL/6J m 55.6667 3.6068 62.7751 48.5583
CBA/J f 66.5 3.6068 73.6084 59.3916
CBA/J m 76.3333 3.6068 83.4417 69.2249
DBA/2J f 70.9167 3.6068 78.0251 63.8083
DBA/2J m 68.75 3.6068 75.8584 61.6416
FVB/NJ f 59.6667 3.6068 66.7751 52.5583
FVB/NJ m 79.5 3.6068 86.6084 72.3916


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 60.0833 2.5504 65.1097 55.0569
A/J both 63.3333 2.5504 68.3597 58.3069
B6129SF1/J both 61.25 2.5504 66.2764 56.2236
B6C3F1/J both 66.0 2.5504 71.0264 60.9736
BALB/cByJ both 66.375 2.5504 71.4014 61.3486
C3H/HeJ both 58.375 2.5504 63.4014 53.3486
C57BL/6J both 56.6667 2.5504 61.6931 51.6403
CBA/J both 71.4167 2.5504 76.4431 66.3903
DBA/2J both 69.8333 2.5504 74.8597 64.8069
FVB/NJ both 69.5833 2.5504 74.6097 64.5569




  GWAS USING LINEAR MIXED MODELS