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Project measure / variable:   Bolivar1   horiz_act_d2

ID, description, units MPD:63402   horiz_act_d2   horizontal activity (beam breaks), 5 min test in dark   [n]  day 2  
Data set, strains Bolivar1   inbred   10 strains     sex: both     age:
Procedure open field test
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  STRAIN COMPARISON PLOT
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Bolivar1 - horizontal activity (beam breaks), 5 min test in dark day 2



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means1389.0   n 1475.0   n
Median of the strain means1332.0   n 1492.0   n
SD of the strain means± 318.8 ± 337.3
Coefficient of variation (CV)0.2295 0.2287
Min–max range of strain means944.7   –   1864.0   n 961.8   –   1868.0   n
Mean sample size per strain12.0   mice 12.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 440241.0042 440241.0042 5.7333 0.0175
strain 9 20273466.5375 2252607.3931 29.3358 < 0.0001
sex:strain 9 3007741.5375 334193.5042 4.3522 < 0.0001
Residuals 220 16893115.9167 76786.8905


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1286.0 430.8   12 124.4 0.3351 525.0, 1850.0 -0.32
129S1/SvImJ m 1034.0 365.7   12 105.6 0.3536 601.0, 1834.0 -1.31
A/J f 944.7 213.8   12 61.72 0.2263 471.0, 1202.0 -1.39
A/J m 961.8 240.4   12 69.41 0.25 585.0, 1498.0 -1.52
B6129SF1/J f 1067.0 275.4   12 79.5 0.2582 621.0, 1480.0 -1.01
B6129SF1/J m 1359.0 172.0   12 49.645 0.1266 1046.0, 1571.0 -0.34
B6C3F1/J f 1459.0 113.4   12 32.75 0.0778 1274.0, 1681.0 0.22
B6C3F1/J m 1409.0 198.9   12 57.41 0.1412 1179.0, 1763.0 -0.2
BALB/cByJ f 1723.0 331.7   12 95.74 0.1925 1399.0, 2426.0 1.05
BALB/cByJ m 1845.0 311.9   12 90.03 0.169 1464.0, 2475.0 1.1
C3H/HeJ f 1092.0 162.5   12 46.921 0.1488 861.0, 1443.0 -0.93
C3H/HeJ m 1196.0 195.0   12 56.29 0.1631 829.0, 1638.0 -0.83
C57BL/6J f 1864.0 355.5   12 102.6 0.1907 1251.0, 2478.0 1.49
C57BL/6J m 1657.0 244.5   12 70.57 0.1475 1352.0, 2077.0 0.54
CBA/J f 1376.0 182.0   12 52.55 0.1323 1120.0, 1698.0 -0.04
CBA/J m 1575.0 478.1   12 138.0 0.3035 973.0, 2447.0 0.3
DBA/2J f 1288.0 326.5   12 94.25 0.2535 474.0, 1696.0 -0.32
DBA/2J m 1844.0 134.5   12 38.833 0.073 1654.0, 2052.0 1.09
FVB/NJ f 1792.0 214.1   12 61.81 0.1195 1554.0, 2261.0 1.26
FVB/NJ m 1868.0 254.7   12 73.53 0.1363 1389.0, 2289.0 1.17


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1285.6667 79.9932 1443.3177 1128.0157
129S1/SvImJ m 1034.25 79.9932 1191.901 876.599
A/J f 944.6667 79.9932 1102.3177 787.0157
A/J m 961.75 79.9932 1119.401 804.099
B6129SF1/J f 1066.5833 79.9932 1224.2343 908.9323
B6129SF1/J m 1358.9167 79.9932 1516.5677 1201.2657
B6C3F1/J f 1458.8333 79.9932 1616.4843 1301.1823
B6C3F1/J m 1408.5833 79.9932 1566.2343 1250.9323
BALB/cByJ f 1722.8333 79.9932 1880.4843 1565.1823
BALB/cByJ m 1844.9167 79.9932 2002.5677 1687.2657
C3H/HeJ f 1092.1667 79.9932 1249.8177 934.5157
C3H/HeJ m 1195.5 79.9932 1353.151 1037.849
C57BL/6J f 1864.4167 79.9932 2022.0677 1706.7657
C57BL/6J m 1656.9167 79.9932 1814.5677 1499.2657
CBA/J f 1376.3333 79.9932 1533.9843 1218.6823
CBA/J m 1575.1667 79.9932 1732.8177 1417.5157
DBA/2J f 1287.9167 79.9932 1445.5677 1130.2657
DBA/2J m 1844.0 79.9932 2001.651 1686.349
FVB/NJ f 1792.3333 79.9932 1949.9843 1634.6823
FVB/NJ m 1868.3333 79.9932 2025.9843 1710.6823


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 1159.9583 56.5637 1271.4344 1048.4822
A/J both 953.2083 56.5637 1064.6844 841.7322
B6129SF1/J both 1212.75 56.5637 1324.2261 1101.2739
B6C3F1/J both 1433.7083 56.5637 1545.1844 1322.2322
BALB/cByJ both 1783.875 56.5637 1895.3511 1672.3989
C3H/HeJ both 1143.8333 56.5637 1255.3094 1032.3572
C57BL/6J both 1760.6667 56.5637 1872.1428 1649.1906
CBA/J both 1475.75 56.5637 1587.2261 1364.2739
DBA/2J both 1565.9583 56.5637 1677.4344 1454.4822
FVB/NJ both 1830.3333 56.5637 1941.8094 1718.8572




  GWAS USING LINEAR MIXED MODELS