Project measure / variable:   Powell1   bacterial_load_wk3

ID, description, units MPD:62803   bacterial_load_wk3   oral cavity bacterial colony count (CFU/swab) post inoculation (x 103)   [n]  wk 3  
Neisseria musculi study
Data set, strains Powell1   inbred   8 strains     sex: both     age: 8-16wks
Procedure in vitro assay
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  STRAIN COMPARISON PLOT
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Powell1 - oral cavity bacterial colony count (CFU/swab) post inoculation (x 103) wk 3



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means4.2866   n 2.2216   n
Median of the strain means0.0005   n 0.0   n
SD of the strain means± 9.8062 ± 5.6964
Coefficient of variation (CV)2.2877 2.5641
Min–max range of strain means0.0   –   28.285   n 0.0   –   16.275   n
Mean sample size per strain19.9   mice 4.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2259.3669 2259.3669 0.161 0.6887
strain 6 23547.3026 3924.5504 0.2797 0.946
sex:strain 6 5291.2811 881.8802 0.0628 0.999
Residuals 180 2525820.0927 14032.3338


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.001 0.00141421   2   0.001 1.4142 -0.44
129S1/SvImJ m 0.0 0.0   2   0.0 None -0.39
A/J f 4.0139 5.8643   18 1.3822 1.461 -0.03
A/J m 16.275 28.963   11 8.7328 1.7796 2.47
C57BL/6J f 1.9925 11.061   56 1.478 5.5513 -0.23
C57BL/6J m 0.18789 0.24018   9 0.08006 1.2783 -0.36
CAST/EiJ f 28.285 188.0   72 22.159 6.6474 2.45
CAST/EiJ m 1.3097 1.1845   7 0.44769 0.9044 0.007, 3.28 -0.16
NOD/ShiLtJ f 0.0 0.0   1   0.0 None -0.44
NOD/ShiLtJ m 0.0 0.0   1   0.0 None -0.39
NZO/HlLtJ f 0.0 0.0   2   0.0 None -0.44
NZO/HlLtJ m 0.0 0.0   2   0.0 None -0.39
PWK/PhJ f 0.0 0.0   4 0.0 None -0.44
PWK/PhJ m 0.0 0.0   3 0.0 None -0.39
WSB/EiJ f 0.0 0.0   4 0.0 None -0.44
WSB/EiJ m 0.0 0.0   2   0.0 None -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.001 83.7626 165.2839 -165.2819
129S1/SvImJ m 0.0 83.7626 165.2829 -165.2829
A/J f 4.0139 27.9209 59.1082 -51.0804
A/J m 16.2755 35.7165 86.7523 -54.2014
C57BL/6J f 1.9925 15.8296 33.228 -29.2431
C57BL/6J m 0.1879 39.4861 78.103 -77.7272
CAST/EiJ f 28.2855 13.9604 55.8326 0.7384
CAST/EiJ m 1.3097 44.773 89.6571 -87.0377
NZO/HlLtJ f 0.0 83.7626 165.2829 -165.2829
NZO/HlLtJ m 0.0 83.7626 165.2829 -165.2829
PWK/PhJ f 0.0 59.2291 116.8726 -116.8726
PWK/PhJ m 0.0 68.3918 134.9529 -134.9529
WSB/EiJ f 0.0 59.2291 116.8726 -116.8726
WSB/EiJ m 0.0 83.7626 165.2829 -165.2829


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0005 59.2291 116.8731 -116.8721
A/J both 10.1447 22.6674 54.8726 -34.5833
C57BL/6J both 1.0902 21.2704 43.0617 -40.8813
CAST/EiJ both 14.7976 23.4495 61.0688 -31.4736
NZO/HlLtJ both 0.0 59.2291 116.8726 -116.8726
PWK/PhJ both 0.0 45.237 89.263 -89.263
WSB/EiJ both 0.0 51.2939 101.2147 -101.2147




  GWAS USING LINEAR MIXED MODELS