Project measure / variable:   Crusio1   lacun_pct_mean

ID, description, units MPD:62084   lacun_pct_mean   percentage of hippocampus that is stratum lacunosum-moleculare   [%]  mean  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum lacunosum-moleculare mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means5.791   % 6.0947   %
Median of the strain means5.789   % 5.8738   %
SD of the strain means± 0.68794 ± 1.1129
Coefficient of variation (CV)0.1188 0.1826
Min–max range of strain means4.5735   –   7.1953   % 4.6828   –   12.225   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5.2685 5.2685 5.1801 0.0235
strain 47 135.6109 2.8853 2.8369 < 0.0001
sex:strain 47 57.7178 1.228 1.2074 0.1758
Residuals 343 348.8523 1.0171


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 6.861 0.0   1   0.0 0.0 6.861020848, 6.861020848 1.56
BXD1 m 7.6888 0.0   1   0.0 0.0 7.688771676, 7.688771676 1.43
BXD100 f 6.3483 1.1234   5 0.50241 0.177 5.478552713, 8.308162195 0.81
BXD100 m 6.0531 0.48952   5 0.21892 0.0809 5.266362261, 6.51853092 -0.04
BXD101 f 6.6532 0.91703   3 0.52945 0.1378 5.963607763, 7.69389727 1.25
BXD101 m 5.8738 0.39008   4 0.19504 0.0664 5.543747875, 6.358819851 -0.2
BXD102 f 6.7424 0.46372   5 0.20738 0.0688 5.960616999, 7.194894964 1.38
BXD102 m 5.9754 0.85095   5 0.38056 0.1424 5.338814497, 7.468927866 -0.11
BXD11 f 4.6085 0.72569   5 0.32454 0.1575 3.872184012, 5.502047164 -1.72
BXD11 m 4.8859 0.91402   5 0.40876 0.1871 3.397970932, 5.881366097 -1.09
BXD13 f 6.1387 0.67357   5 0.30123 0.1097 5.287845828, 7.073573991 0.51
BXD13 m 6.5906 0.46615   5 0.20847 0.0707 5.88304924, 7.021185829 0.45
BXD14 f 5.8911 0.64564   5 0.28874 0.1096 5.304768792, 6.923441118 0.15
BXD14 m 5.7521 0.68306   5 0.30548 0.1188 5.147191261, 6.625754084 -0.31
BXD15 f 5.729 0.31229   5 0.13966 0.0545 5.424615568, 6.207617492 -0.09
BXD15 m 6.4599 0.55951   5 0.25022 0.0866 5.928997643, 7.402795823 0.33
BXD16 f 5.789 0.87109   5 0.38956 0.1505 4.853692324, 6.831928486 0.0
BXD16 m 5.8491 0.88067   5 0.39385 0.1506 4.653365518, 6.886098713 -0.22
BXD18 f 7.1953 0.0   1   0.0 0.0 7.195307578, 7.195307578 2.04
BXD18 m 6.185 0.0   1   0.0 0.0 6.184953501, 6.184953501 0.08
BXD19 f 5.514 0.0   1   0.0 0.0 5.514045296, 5.514045296 -0.4
BXD19 m 6.041 0.0   1   0.0 0.0 6.041022256, 6.041022256 -0.05
BXD2 f 4.5735 0.17437   5 0.07798 0.0381 4.324004249, 4.776022146 -1.77
BXD2 m 6.0802 2.6064   5 1.1656 0.4287 4.29687491, 10.68301038 -0.01
BXD21 f 6.083 1.0093   5 0.45136 0.1659 4.932771623, 7.151743847 0.42
BXD21 m 5.3642 0.76738   6 0.31328 0.1431 4.719713162, 6.40617814 -0.66
BXD27 f 6.6762 1.5923   5 0.71208 0.2385 5.173199909, 9.221511263 1.29
BXD27 m 5.8218 0.57153   5 0.2556 0.0982 4.92808554, 6.501747996 -0.25
BXD28 f 5.0714 0.57166   5 0.25565 0.1127 4.673110319, 6.024709826 -1.05
BXD28 m 5.2732 0.52407   5 0.23437 0.0994 4.666849191, 5.76289239 -0.74
BXD31 f 6.6011 0.75934   5 0.33959 0.115 5.680046845, 7.34582155 1.18
BXD31 m 7.1083 0.58059   4 0.2903 0.0817 6.580862799, 7.76975475 0.91
BXD32 f 5.0521 0.45735   5 0.20453 0.0905 4.638854108, 5.603105101 -1.07
BXD32 m 5.3081 0.64044   5 0.28641 0.1207 4.647788238, 5.949900151 -0.71
BXD33 m 5.5114 0.0   1   0.0 0.0 5.511413553, 5.511413553 -0.52
BXD34 f 5.1729 0.0   1   0.0 0.0 5.172912995, 5.172912995 -0.9
BXD34 m 4.9569 0.0   1   0.0 0.0 4.95689381, 4.95689381 -1.02
BXD39 f 4.8243 0.69412   5 0.31042 0.1439 3.698932275, 5.309150197 -1.41
BXD39 m 5.3168 0.48203   5 0.21557 0.0907 4.6978559, 5.809487013 -0.7
BXD40 f 5.8387 0.84745   5 0.37899 0.1451 5.066176685, 7.246693611 0.07
BXD40 m 6.2332 0.72871   5 0.32589 0.1169 5.526906148, 7.315207276 0.12
BXD42 f 5.931 0.59883   5 0.2678 0.101 4.869474863, 6.316140913 0.2
BXD42 m 6.4572 0.4834   5 0.21618 0.0749 5.789148401, 6.959788046 0.33
BXD43 f 5.6294 0.50288   5 0.22489 0.0893 4.85380167, 6.101599402 -0.23
BXD43 m 5.6388 0.75863   5 0.33927 0.1345 4.426275855, 6.519708314 -0.41
BXD44 f 6.1906 0.55406   5 0.24778 0.0895 5.850432235, 7.166095092 0.58
BXD44 m 5.6148 1.2962   5 0.57966 0.2308 4.065002255, 7.617219738 -0.43
BXD48 f 4.9283 0.74431   5 0.33287 0.151 4.277303481, 6.074690291 -1.25
BXD48 m 6.3656 2.5612   5 1.1454 0.4024 5.066870029, 10.94330477 0.24
BXD49 f 6.6657 1.1194   4 0.55972 0.1679 5.056501569, 7.650194753 1.27
BXD49 m 6.5786 0.8412   5 0.37619 0.1279 5.405011987, 7.487048121 0.43
BXD50 f 5.6988 0.77318   5 0.34578 0.1357 4.436604781, 6.409799433 -0.13
BXD50 m 6.6261 0.65378   5 0.29238 0.0987 5.892830167, 7.497030662 0.48
BXD51 f 6.0551 0.3444   5 0.15402 0.0569 5.622236446, 6.382154268 0.38
BXD51 m 6.2784 0.74452   5 0.33296 0.1186 5.549014814, 7.133570742 0.17
BXD6 f 6.9324 1.7039   5 0.76199 0.2458 5.341833542, 9.80579172 1.66
BXD6 m 6.6996 0.29047   4 0.14523 0.0434 6.289229686, 6.95494848 0.54
BXD61 f 5.8783 0.68827   5 0.3078 0.1171 4.830214011, 6.758556864 0.13
BXD61 m 5.8501 0.99017   5 0.44282 0.1693 4.402610797, 6.729423869 -0.22
BXD62 f 6.3393 2.7523   5 1.2309 0.4342 4.624353254, 11.13426344 0.8
BXD62 m 5.0204 0.65719   5 0.2939 0.1309 3.968498184, 5.639008621 -0.97
BXD65 f 5.4889 0.12665   3 0.07312 0.0231 5.370002244, 5.622102659 -0.44
BXD65 m 5.9485 0.51035   5 0.22824 0.0858 5.089671703, 6.442700393 -0.13
BXD66 f 5.2861 0.46644   2   0.32982 0.0882 4.956262011, 5.615904346 -0.73
BXD66 m 6.4339 1.7599   2   1.2444 0.2735 5.189493988, 7.678382853 0.3
BXD68 f 5.84 1.3021   2   0.92076 0.223 4.919194808, 6.760705276 0.07
BXD68 m 5.8042 0.44251   3 0.25548 0.0762 5.462939336, 6.304164475 -0.26
BXD69 f 5.3608 0.29444   4 0.14722 0.0549 5.017275204, 5.733164752 -0.63
BXD69 m 5.3389 0.68378   5 0.3058 0.1281 4.288189201, 6.056526959 -0.68
BXD70 f 5.686 0.89009   5 0.39806 0.1565 5.239413752, 7.276166148 -0.15
BXD70 m 5.8754 0.61782   5 0.2763 0.1052 5.175638979, 6.747485321 -0.2
BXD71 m 4.7861 0.0   1   0.0 0.0 4.78605111, 4.78605111 -1.18
BXD73 f 5.782 0.58939   5 0.26359 0.1019 5.095121295, 6.406885371 -0.01
BXD73 m 6.9863 1.7267   5 0.77222 0.2472 5.788985855, 9.997113393 0.8
BXD75 f 5.8623 0.69602   5 0.31127 0.1187 4.98119495, 6.907227147 0.1
BXD75 m 5.6796 0.23348   5 0.10442 0.0411 5.355669873, 5.987109983 -0.37
BXD77 f 5.7577 0.81277   2   0.57472 0.1412 5.182982809, 6.332414053 -0.05
BXD77 m 5.3649 0.15972   2   0.11294 0.0298 5.251997421, 5.477875035 -0.66
BXD8 f 5.4391 0.52553   5 0.23502 0.0966 4.626300208, 5.83497573 -0.51
BXD8 m 5.5872 0.49482   5 0.22129 0.0886 4.81087126, 6.035732664 -0.46
BXD80 f 6.2854 0.50643   5 0.22648 0.0806 5.663462811, 6.975769274 0.72
BXD80 m 6.3207 0.44428   5 0.19869 0.0703 5.725885306, 6.765707112 0.2
BXD81 f 4.9397 0.54522   5 0.24383 0.1104 4.381745492, 5.571088617 -1.24
BXD81 m 5.5927 0.8846   5 0.3956 0.1582 4.49651426, 6.502377926 -0.45
BXD84 f 6.2661 0.79122   5 0.35385 0.1263 5.163586798, 7.19350626 0.69
BXD84 m 6.025 0.67015   5 0.2997 0.1112 5.32853929, 6.975531462 -0.06
BXD85 f 6.6712 0.49238   2   0.34817 0.0738 6.323045429, 7.019381415 1.28
BXD85 m 6.4646 0.27034   2   0.19116 0.0418 6.273427359, 6.655747763 0.33
BXD86 f 5.8101 3.0975   5 1.3852 0.5331 3.74734561, 11.19016415 0.03
BXD86 m 5.6711 1.3939   4 0.69696 0.2458 4.822266149, 7.753949211 -0.38
BXD87 f 5.6746 0.86142   5 0.38524 0.1518 4.634327143, 6.979502247 -0.17
BXD87 m 5.84 0.65908   5 0.29475 0.1129 5.270556432, 6.928005123 -0.23
BXD89 f 5.5123 0.8135   5 0.36381 0.1476 4.748701834, 6.511782186 -0.41
BXD89 m 5.6944 0.92259   5 0.4126 0.162 4.488433751, 6.931872932 -0.36
BXD90 f 5.0054 0.53551   3 0.30918 0.107 4.646812282, 5.620967298 -1.14
BXD90 m 8.41 3.3506   3 1.9345 0.3984 6.264887934, 12.27091565 2.08
BXD92 f 6.2172 0.0   1   0.0 0.0 6.217173027, 6.217173027 0.62
BXD92 m 12.225 0.0   1   0.0 0.0 12.22456589, 12.22456589 5.51
BXD96 f 4.6817 0.29806   5 0.13329 0.0637 4.409764724, 5.040164213 -1.61
BXD96 m 6.3887 1.712   5 0.76564 0.268 4.684370416, 9.169533074 0.26
BXD97 f 4.8984 0.90909   5 0.40656 0.1856 3.90444516, 5.840623297 -1.3
BXD97 m 5.7277 0.91893   4 0.45947 0.1604 4.771987906, 6.897071087 -0.33
BXD98 f 5.0585 0.89097   2   0.63001 0.1761 4.428453879, 5.688481787 -1.06
BXD98 m 5.0861 1.3671   4 0.68353 0.2688 4.071760545, 7.073913052 -0.91
C57BL/6J f 7.1197 0.58913   5 0.26347 0.0827 6.321606964, 7.593107987 1.93
C57BL/6J m 7.8136 0.58489   5 0.26157 0.0749 7.25159839, 8.514619124 1.54
DBA/2J f 4.6662 0.59213   5 0.26481 0.1269 3.668674038, 5.185415735 -1.64
DBA/2J m 4.6828 0.66048   5 0.29537 0.141 3.634615916, 5.438120984 -1.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 6.3483 0.451 7.2354 5.4612
BXD100 m 6.0531 0.451 6.9402 5.166
BXD101 f 6.6532 0.5823 7.7984 5.508
BXD101 m 5.8738 0.5042 6.8656 4.882
BXD102 f 6.7424 0.451 7.6295 5.8553
BXD102 m 5.9754 0.451 6.8625 5.0883
BXD11 f 4.6085 0.451 5.4956 3.7214
BXD11 m 4.8859 0.451 5.773 3.9988
BXD13 f 6.1387 0.451 7.0258 5.2516
BXD13 m 6.5906 0.451 7.4777 5.7035
BXD14 f 5.8911 0.451 6.7782 5.004
BXD14 m 5.7521 0.451 6.6392 4.865
BXD15 f 5.729 0.451 6.6161 4.8419
BXD15 m 6.4599 0.451 7.347 5.5728
BXD16 f 5.789 0.451 6.6761 4.9019
BXD16 m 5.8491 0.451 6.7362 4.962
BXD2 f 4.5735 0.451 5.4606 3.6864
BXD2 m 6.0802 0.451 6.9673 5.1931
BXD21 f 6.083 0.451 6.9701 5.1959
BXD21 m 5.3642 0.4117 6.174 4.5544
BXD27 f 6.6762 0.451 7.5633 5.7891
BXD27 m 5.8218 0.451 6.7089 4.9347
BXD28 f 5.0714 0.451 5.9585 4.1843
BXD28 m 5.2732 0.451 6.1603 4.3861
BXD31 f 6.6011 0.451 7.4882 5.714
BXD31 m 7.1083 0.5042 8.1001 6.1165
BXD32 f 5.0521 0.451 5.9392 4.165
BXD32 m 5.3081 0.451 6.1952 4.421
BXD39 f 4.8243 0.451 5.7114 3.9372
BXD39 m 5.3168 0.451 6.2039 4.4297
BXD40 f 5.8387 0.451 6.7258 4.9516
BXD40 m 6.2332 0.451 7.1203 5.3461
BXD42 f 5.931 0.451 6.8181 5.0439
BXD42 m 6.4572 0.451 7.3443 5.5701
BXD43 f 5.6294 0.451 6.5165 4.7423
BXD43 m 5.6388 0.451 6.5259 4.7517
BXD44 f 6.1906 0.451 7.0777 5.3035
BXD44 m 5.6148 0.451 6.5019 4.7277
BXD48 f 4.9283 0.451 5.8154 4.0412
BXD48 m 6.3656 0.451 7.2527 5.4785
BXD49 f 6.6657 0.5042 7.6575 5.6739
BXD49 m 6.5786 0.451 7.4657 5.6915
BXD50 f 5.6988 0.451 6.5859 4.8117
BXD50 m 6.6261 0.451 7.5132 5.739
BXD51 f 6.0551 0.451 6.9422 5.168
BXD51 m 6.2784 0.451 7.1655 5.3913
BXD6 f 6.9324 0.451 7.8195 6.0453
BXD6 m 6.6996 0.5042 7.6914 5.7078
BXD61 f 5.8783 0.451 6.7653 4.9912
BXD61 m 5.8501 0.451 6.7371 4.963
BXD62 f 6.3393 0.451 7.2264 5.4522
BXD62 m 5.0204 0.451 5.9075 4.1333
BXD65 f 5.4889 0.5823 6.6342 4.3437
BXD65 m 5.9485 0.451 6.8356 5.0614
BXD66 f 5.2861 0.7131 6.6887 3.8835
BXD66 m 6.4339 0.7131 7.8366 5.0313
BXD68 f 5.84 0.7131 7.2426 4.4373
BXD68 m 5.8042 0.5823 6.9494 4.6589
BXD69 f 5.3608 0.5042 6.3526 4.369
BXD69 m 5.3389 0.451 6.226 4.4518
BXD70 f 5.686 0.451 6.5731 4.7989
BXD70 m 5.8754 0.451 6.7625 4.9883
BXD73 f 5.782 0.451 6.6691 4.8949
BXD73 m 6.9863 0.451 7.8734 6.0992
BXD75 f 5.8623 0.451 6.7494 4.9752
BXD75 m 5.6796 0.451 6.5667 4.7925
BXD77 f 5.7577 0.7131 7.1603 4.3551
BXD77 m 5.3649 0.7131 6.7676 3.9623
BXD8 f 5.4391 0.451 6.3262 4.552
BXD8 m 5.5872 0.451 6.4743 4.7001
BXD80 f 6.2854 0.451 7.1725 5.3983
BXD80 m 6.3207 0.451 7.2078 5.4336
BXD81 f 4.9397 0.451 5.8268 4.0526
BXD81 m 5.5927 0.451 6.4798 4.7056
BXD84 f 6.2661 0.451 7.1532 5.379
BXD84 m 6.025 0.451 6.9121 5.1379
BXD85 f 6.6712 0.7131 8.0738 5.2686
BXD85 m 6.4646 0.7131 7.8672 5.062
BXD86 f 5.8101 0.451 6.6972 4.923
BXD86 m 5.6711 0.5042 6.6629 4.6793
BXD87 f 5.6746 0.451 6.5617 4.7875
BXD87 m 5.84 0.451 6.7271 4.9529
BXD89 f 5.5123 0.451 6.3994 4.6252
BXD89 m 5.6944 0.451 6.5815 4.8073
BXD90 f 5.0054 0.5823 6.1506 3.8602
BXD90 m 8.41 0.5823 9.5552 7.2647
BXD96 f 4.6817 0.451 5.5688 3.7946
BXD96 m 6.3887 0.451 7.2758 5.5016
BXD97 f 4.8984 0.451 5.7855 4.0113
BXD97 m 5.7277 0.5042 6.7195 4.7359
BXD98 f 5.0585 0.7131 6.4611 3.6558
BXD98 m 5.0861 0.5042 6.0779 4.0943
C57BL/6J f 7.1197 0.451 8.0068 6.2326
C57BL/6J m 7.8136 0.451 8.7007 6.9265
DBA/2J f 4.6662 0.451 5.5533 3.7791
DBA/2J m 4.6828 0.451 5.5699 3.7957


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 6.2007 0.3189 6.828 5.5734
BXD101 both 6.2635 0.3851 7.021 5.506
BXD102 both 6.3589 0.3189 6.9861 5.7316
BXD11 both 4.7472 0.3189 5.3745 4.1199
BXD13 both 6.3647 0.3189 6.9919 5.7374
BXD14 both 5.8216 0.3189 6.4489 5.1943
BXD15 both 6.0944 0.3189 6.7217 5.4671
BXD16 both 5.8191 0.3189 6.4463 5.1918
BXD2 both 5.3268 0.3189 5.9541 4.6996
BXD21 both 5.7236 0.3053 6.3241 5.123
BXD27 both 6.249 0.3189 6.8763 5.6217
BXD28 both 5.1723 0.3189 5.7996 4.545
BXD31 both 6.8547 0.3383 7.52 6.1894
BXD32 both 5.1801 0.3189 5.8074 4.5529
BXD39 both 5.0705 0.3189 5.6978 4.4433
BXD40 both 6.0359 0.3189 6.6632 5.4087
BXD42 both 6.1941 0.3189 6.8214 5.5668
BXD43 both 5.6341 0.3189 6.2614 5.0068
BXD44 both 5.9027 0.3189 6.53 5.2754
BXD48 both 5.6469 0.3189 6.2742 5.0197
BXD49 both 6.6221 0.3383 7.2875 5.9568
BXD50 both 6.1625 0.3189 6.7897 5.5352
BXD51 both 6.1668 0.3189 6.7941 5.5395
BXD6 both 6.816 0.3383 7.4813 6.1507
BXD61 both 5.8642 0.3189 6.4914 5.2369
BXD62 both 5.6798 0.3189 6.3071 5.0526
BXD65 both 5.7187 0.3683 6.443 4.9944
BXD66 both 5.86 0.5042 6.8518 4.8682
BXD68 both 5.8221 0.4603 6.7275 4.9167
BXD69 both 5.3498 0.3383 6.0152 4.6845
BXD70 both 5.7807 0.3189 6.408 5.1535
BXD73 both 6.3841 0.3189 7.0114 5.7568
BXD75 both 5.7709 0.3189 6.3982 5.1437
BXD77 both 5.5613 0.5042 6.5531 4.5695
BXD8 both 5.5132 0.3189 6.1404 4.8859
BXD80 both 6.303 0.3189 6.9303 5.6757
BXD81 both 5.2662 0.3189 5.8934 4.6389
BXD84 both 6.1455 0.3189 6.7728 5.5183
BXD85 both 6.5679 0.5042 7.5597 5.5761
BXD86 both 5.7406 0.3383 6.4059 5.0753
BXD87 both 5.7573 0.3189 6.3846 5.13
BXD89 both 5.6034 0.3189 6.2306 4.9761
BXD90 both 6.7077 0.4117 7.5175 5.8979
BXD96 both 5.5352 0.3189 6.1625 4.9079
BXD97 both 5.3131 0.3383 5.9784 4.6477
BXD98 both 5.0723 0.4367 5.9312 4.2134
C57BL/6J both 7.4667 0.3189 8.0939 6.8394
DBA/2J both 4.6745 0.3189 5.3018 4.0472




  GWAS USING LINEAR MIXED MODELS