Project measure / variable:   Crusio1   rad_pct_L

ID, description, units MPD:62077   rad_pct_L   percentage of hippocampus that is stratum radiatum   [%]  left  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum radiatum left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means25.777   % 26.274   %
Median of the strain means25.99   % 26.318   %
SD of the strain means± 1.1868 ± 1.4006
Coefficient of variation (CV)0.046 0.0533
Min–max range of strain means21.739   –   27.886   % 22.348   –   29.733   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 11.1829 11.1829 6.1694 0.0135
strain 47 492.7347 10.4837 5.7837 < 0.0001
sex:strain 47 60.0677 1.278 0.7051 0.928
Residuals 343 621.7324 1.8126


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 26.168 0.0   1   0.0 0.0 26.16826151, 26.16826151 0.33
BXD1 m 27.923 0.0   1   0.0 0.0 27.92314719, 27.92314719 1.18
BXD100 f 26.284 1.4798   5 0.66177 0.0563 24.81229904, 28.1713875 0.43
BXD100 m 26.341 1.3451   5 0.60156 0.0511 25.01328564, 28.13444028 0.05
BXD101 f 26.429 1.0623   3 0.61332 0.0402 25.73399459, 27.65216667 0.55
BXD101 m 25.878 0.40577   4 0.20289 0.0157 25.38681495, 26.3706399 -0.28
BXD102 f 25.489 1.5425   5 0.68984 0.0605 23.0057284, 27.21973095 -0.24
BXD102 m 25.349 0.80583   5 0.36038 0.0318 24.4174968, 26.5961728 -0.66
BXD11 f 25.752 1.4041   5 0.62794 0.0545 23.78768818, 27.32702553 -0.02
BXD11 m 26.28 1.5064   5 0.67367 0.0573 23.7677596, 27.77141009 0.0
BXD13 f 24.503 0.48259   5 0.21582 0.0197 24.16661336, 25.34531385 -1.07
BXD13 m 24.802 0.77021   5 0.34445 0.0311 23.79334718, 25.94822702 -1.05
BXD14 f 26.76 1.4995   5 0.67059 0.056 24.46947264, 28.40267589 0.83
BXD14 m 27.098 0.80536   5 0.36017 0.0297 25.95289714, 28.20633526 0.59
BXD15 f 25.91 1.1287   5 0.50477 0.0436 24.46883798, 27.43682499 0.11
BXD15 m 26.918 1.1297   5 0.50523 0.042 25.79825179, 28.21075816 0.46
BXD16 f 25.766 2.0316   5 0.90856 0.0788 22.54372686, 27.99255218 -0.01
BXD16 m 25.315 2.5029   5 1.1193 0.0989 21.26570064, 27.61332885 -0.69
BXD18 f 26.943 0.0   1   0.0 0.0 26.94273612, 26.94273612 0.98
BXD18 m 27.49 0.0   1   0.0 0.0 27.49029727, 27.49029727 0.87
BXD19 f 21.739 0.0   1   0.0 0.0 21.73941773, 21.73941773 -3.4
BXD19 m 26.654 0.0   1   0.0 0.0 26.65426948, 26.65426948 0.27
BXD2 f 27.788 1.8978   5 0.84871 0.0683 24.65678518, 29.6468693 1.69
BXD2 m 28.438 1.0901   5 0.48752 0.0383 27.34614811, 30.05688084 1.54
BXD21 f 24.577 0.87021   5 0.38917 0.0354 23.54068605, 25.92520205 -1.01
BXD21 m 25.628 0.80678   6 0.32937 0.0315 24.94853476, 26.72032567 -0.46
BXD27 f 27.551 1.8642   5 0.83369 0.0677 26.20740285, 30.68878076 1.5
BXD27 m 27.171 1.1886   5 0.53158 0.0437 25.65058812, 28.73455026 0.64
BXD28 f 26.785 1.4134   5 0.6321 0.0528 24.44211195, 27.89282972 0.85
BXD28 m 27.866 1.0965   5 0.49037 0.0393 27.19926249, 29.80322108 1.14
BXD31 f 26.266 1.4614   5 0.65354 0.0556 24.00530987, 27.75131522 0.41
BXD31 m 26.318 0.55848   4 0.27924 0.0212 25.55665195, 26.85296867 0.03
BXD32 f 25.887 0.79436   5 0.35525 0.0307 24.8492642, 26.98600192 0.09
BXD32 m 25.767 1.7559   5 0.78528 0.0681 23.83083699, 27.94372157 -0.36
BXD33 m 25.289 0.0   1   0.0 0.0 25.2887155, 25.2887155 -0.7
BXD34 f 27.139 0.0   1   0.0 0.0 27.13853995, 27.13853995 1.15
BXD34 m 28.103 0.0   1   0.0 0.0 28.10334282, 28.10334282 1.31
BXD39 f 26.12 1.0916   5 0.4882 0.0418 24.67730038, 27.23474855 0.29
BXD39 m 26.733 0.9373   5 0.41918 0.0351 25.71151722, 28.0595812 0.33
BXD40 f 24.863 0.45929   5 0.2054 0.0185 24.27740789, 25.47367081 -0.77
BXD40 m 25.992 0.49247   5 0.22024 0.0189 25.37200069, 26.40059952 -0.2
BXD42 f 24.316 1.2804   5 0.57261 0.0527 22.82648543, 26.29829654 -1.23
BXD42 m 24.655 0.82464   5 0.36879 0.0334 23.72986721, 25.8136307 -1.16
BXD43 f 27.469 1.2691   5 0.56755 0.0462 25.83347391, 28.89006306 1.43
BXD43 m 27.753 1.3172   5 0.58906 0.0475 25.57513882, 29.03677081 1.06
BXD44 f 25.938 1.7081   5 0.76389 0.0659 23.31281276, 27.84977396 0.14
BXD44 m 25.304 1.2447   5 0.55666 0.0492 23.91555155, 27.11167926 -0.69
BXD48 f 25.745 1.0452   5 0.46745 0.0406 24.44076738, 27.27545573 -0.03
BXD48 m 26.475 1.7769   5 0.79465 0.0671 24.89701619, 28.70883439 0.14
BXD49 f 25.064 1.0289   4 0.51446 0.0411 23.86546258, 26.35107464 -0.6
BXD49 m 26.449 1.0784   5 0.48229 0.0408 25.20768559, 27.6060458 0.12
BXD50 f 25.845 0.67706   5 0.30279 0.0262 24.9424779, 26.65985994 0.06
BXD50 m 26.041 1.2162   5 0.5439 0.0467 24.23245084, 27.63681221 -0.17
BXD51 f 26.888 1.9417   5 0.86835 0.0722 24.34544544, 29.58125167 0.94
BXD51 m 26.408 1.0893   5 0.48715 0.0412 25.29875208, 27.93515416 0.1
BXD6 f 26.102 1.0024   5 0.4483 0.0384 24.64596512, 27.42212559 0.27
BXD6 m 25.597 0.85294   4 0.42647 0.0333 24.54921447, 26.63385507 -0.48
BXD61 f 24.821 0.6593   5 0.29485 0.0266 23.71707323, 25.45285474 -0.81
BXD61 m 23.587 2.2138   5 0.99006 0.0939 19.72391827, 25.07080871 -1.92
BXD62 f 24.561 1.0766   5 0.48149 0.0438 23.0198056, 25.56686667 -1.02
BXD62 m 25.823 0.4145   5 0.18537 0.0161 25.40591971, 26.3049277 -0.32
BXD65 f 23.696 1.7655   3 1.0193 0.0745 21.68023598, 24.96617714 -1.75
BXD65 m 25.542 0.83403   5 0.37299 0.0327 24.22150755, 26.4218424 -0.52
BXD66 f 25.801 0.10786   2   0.07627 0.0042 25.72426347, 25.87679773 0.02
BXD66 m 26.1 0.80344   2   0.56812 0.0308 25.53216106, 26.66839308 -0.12
BXD68 f 26.378 0.39401   2   0.27861 0.0149 26.09903243, 26.65624693 0.51
BXD68 m 28.254 1.0674   3 0.61627 0.0378 27.02643771, 28.96281383 1.41
BXD69 f 25.923 1.8693   4 0.93464 0.0721 23.60185637, 27.97665819 0.12
BXD69 m 25.473 1.6507   5 0.73821 0.0648 23.87153949, 27.84523518 -0.57
BXD70 f 26.328 0.91148   5 0.40763 0.0346 25.55223258, 27.85177959 0.46
BXD70 m 26.39 0.63521   5 0.28407 0.0241 25.63821111, 27.34937833 0.08
BXD71 m 29.733 0.0   1   0.0 0.0 29.73270086, 29.73270086 2.47
BXD73 f 26.16 1.7313   5 0.77424 0.0662 23.8470888, 28.27558459 0.32
BXD73 m 25.57 1.465   5 0.65518 0.0573 23.61564448, 27.22560654 -0.5
BXD75 f 26.016 1.2458   5 0.55714 0.0479 24.66006543, 27.73365996 0.2
BXD75 m 25.645 1.811   5 0.80989 0.0706 22.79743522, 27.6593866 -0.45
BXD77 f 26.283 0.20646   2   0.14599 0.0079 26.13677893, 26.42875622 0.43
BXD77 m 27.026 0.66568   2   0.4707 0.0246 26.55552052, 27.49692902 0.54
BXD8 f 23.023 1.5407   5 0.68904 0.0669 21.09740483, 25.15565953 -2.32
BXD8 m 22.668 1.45   5 0.64845 0.064 20.44613686, 24.42052374 -2.57
BXD80 f 27.886 1.6966   5 0.75873 0.0608 25.23342964, 29.60163015 1.78
BXD80 m 28.447 1.7252   5 0.77151 0.0606 26.31634936, 30.19122794 1.55
BXD81 f 24.88 1.9286   5 0.86249 0.0775 21.55677381, 26.38998384 -0.76
BXD81 m 25.37 1.1741   5 0.52507 0.0463 24.4247202, 27.35840065 -0.65
BXD84 f 26.014 0.33526   5 0.14993 0.0129 25.53700581, 26.41041925 0.2
BXD84 m 26.048 1.2785   5 0.57178 0.0491 24.71029191, 27.967324 -0.16
BXD85 f 25.99 0.08297   2   0.05867 0.0032 25.93090509, 26.04824799 0.18
BXD85 m 27.652 0.41794   2   0.29553 0.0151 27.3563676, 27.94742879 0.98
BXD86 f 26.464 1.8377   5 0.82184 0.0694 24.86894249, 28.57447013 0.58
BXD86 m 26.876 0.74376   4 0.37188 0.0277 26.17878707, 27.89689235 0.43
BXD87 f 26.917 1.6594   5 0.74209 0.0616 24.99189957, 29.01172399 0.96
BXD87 m 26.932 2.0066   5 0.89736 0.0745 24.19984018, 29.42947008 0.47
BXD89 f 26.917 2.4299   5 1.0867 0.0903 23.68189236, 28.79406288 0.96
BXD89 m 26.542 1.4007   5 0.6264 0.0528 24.24053071, 27.89806233 0.19
BXD90 f 23.617 1.1634   3 0.67169 0.0493 22.36131197, 24.6582931 -1.82
BXD90 m 23.811 2.1027   3 1.214 0.0883 21.50739229, 25.62668992 -1.76
BXD92 f 24.496 0.0   1   0.0 0.0 24.49597153, 24.49597153 -1.08
BXD92 m 22.348 0.0   1   0.0 0.0 22.34817477, 22.34817477 -2.8
BXD96 f 24.973 0.88908   5 0.39761 0.0356 23.97273732, 25.89368676 -0.68
BXD96 m 26.359 1.2711   5 0.56848 0.0482 25.03600137, 28.04500412 0.06
BXD97 f 25.854 1.9357   5 0.86569 0.0749 23.02367778, 27.92500933 0.07
BXD97 m 27.932 0.52813   4 0.26406 0.0189 27.49708505, 28.61540686 1.18
BXD98 f 26.18 0.22899   2   0.16192 0.0087 26.01843589, 26.34227964 0.34
BXD98 m 26.251 0.80892   4 0.40446 0.0308 25.4701136, 27.35227108 -0.02
C57BL/6J f 24.658 1.6943   5 0.75774 0.0687 22.13031745, 26.90540283 -0.94
C57BL/6J m 24.737 1.7489   5 0.78213 0.0707 22.74903141, 26.873409 -1.1
DBA/2J f 26.24 0.92734   5 0.41472 0.0353 24.65229172, 27.0081045 0.39
DBA/2J m 27.946 0.63135   5 0.28235 0.0226 27.32714439, 28.83164233 1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 26.2845 0.6021 27.4688 25.1002
BXD100 m 26.341 0.6021 27.5253 25.1568
BXD101 f 26.4294 0.7773 27.9583 24.9005
BXD101 m 25.8783 0.6732 27.2023 24.5542
BXD102 f 25.4891 0.6021 26.6734 24.3048
BXD102 m 25.3487 0.6021 26.533 24.1645
BXD11 f 25.7521 0.6021 26.9363 24.5678
BXD11 m 26.2804 0.6021 27.4646 25.0961
BXD13 f 24.5031 0.6021 25.6874 23.3189
BXD13 m 24.8017 0.6021 25.986 23.6174
BXD14 f 26.7599 0.6021 27.9442 25.5757
BXD14 m 27.0983 0.6021 28.2826 25.914
BXD15 f 25.9096 0.6021 27.0939 24.7253
BXD15 m 26.9175 0.6021 28.1018 25.7332
BXD16 f 25.7661 0.6021 26.9504 24.5818
BXD16 m 25.3154 0.6021 26.4997 24.1311
BXD2 f 27.7884 0.6021 28.9726 26.6041
BXD2 m 28.438 0.6021 29.6222 27.2537
BXD21 f 24.5767 0.6021 25.761 23.3925
BXD21 m 25.6277 0.5496 26.7088 24.5466
BXD27 f 27.5506 0.6021 28.7349 26.3663
BXD27 m 27.1715 0.6021 28.3558 25.9872
BXD28 f 26.7845 0.6021 27.9688 25.6003
BXD28 m 27.8664 0.6021 29.0507 26.6821
BXD31 f 26.2656 0.6021 27.4499 25.0814
BXD31 m 26.3184 0.6732 27.6425 24.9944
BXD32 f 25.8874 0.6021 27.0717 24.7031
BXD32 m 25.7668 0.6021 26.951 24.5825
BXD39 f 26.1203 0.6021 27.3046 24.936
BXD39 m 26.7325 0.6021 27.9168 25.5482
BXD40 f 24.8634 0.6021 26.0477 23.6791
BXD40 m 25.9923 0.6021 27.1766 24.808
BXD42 f 24.3158 0.6021 25.5001 23.1316
BXD42 m 24.6552 0.6021 25.8395 23.4709
BXD43 f 27.4692 0.6021 28.6534 26.2849
BXD43 m 27.753 0.6021 28.9373 26.5688
BXD44 f 25.938 0.6021 27.1222 24.7537
BXD44 m 25.3044 0.6021 26.4886 24.1201
BXD48 f 25.7452 0.6021 26.9295 24.5609
BXD48 m 26.4753 0.6021 27.6596 25.2911
BXD49 f 25.0644 0.6732 26.3884 23.7403
BXD49 m 26.4495 0.6021 27.6338 25.2652
BXD50 f 25.8448 0.6021 27.0291 24.6606
BXD50 m 26.0413 0.6021 27.2256 24.8571
BXD51 f 26.8883 0.6021 28.0726 25.704
BXD51 m 26.408 0.6021 27.5923 25.2237
BXD6 f 26.1018 0.6021 27.2861 24.9176
BXD6 m 25.5972 0.6732 26.9213 24.2732
BXD61 f 24.8213 0.6021 26.0056 23.637
BXD61 m 23.5871 0.6021 24.7714 22.4029
BXD62 f 24.5606 0.6021 25.7449 23.3763
BXD62 m 25.8233 0.6021 27.0076 24.639
BXD65 f 23.6963 0.7773 25.2252 22.1674
BXD65 m 25.5418 0.6021 26.7261 24.3575
BXD66 f 25.8005 0.952 27.673 23.928
BXD66 m 26.1003 0.952 27.9728 24.2278
BXD68 f 26.3776 0.952 28.2501 24.5051
BXD68 m 28.2541 0.7773 29.783 26.7252
BXD69 f 25.9227 0.6732 27.2467 24.5986
BXD69 m 25.4729 0.6021 26.6572 24.2886
BXD70 f 26.3278 0.6021 27.5121 25.1436
BXD70 m 26.3895 0.6021 27.5738 25.2053
BXD73 f 26.1601 0.6021 27.3444 24.9758
BXD73 m 25.5699 0.6021 26.7542 24.3857
BXD75 f 26.016 0.6021 27.2003 24.8317
BXD75 m 25.6449 0.6021 26.8292 24.4607
BXD77 f 26.2828 0.952 28.1553 24.4103
BXD77 m 27.0262 0.952 28.8987 25.1537
BXD8 f 23.0233 0.6021 24.2076 21.839
BXD8 m 22.6676 0.6021 23.8519 21.4833
BXD80 f 27.886 0.6021 29.0703 26.7017
BXD80 m 28.4473 0.6021 29.6316 27.263
BXD81 f 24.8796 0.6021 26.0639 23.6954
BXD81 m 25.3703 0.6021 26.5546 24.186
BXD84 f 26.0136 0.6021 27.1979 24.8293
BXD84 m 26.048 0.6021 27.2323 24.8638
BXD85 f 25.9896 0.952 27.8621 24.1171
BXD85 m 27.6519 0.952 29.5244 25.7794
BXD86 f 26.4639 0.6021 27.6482 25.2796
BXD86 m 26.8758 0.6732 28.1998 25.5517
BXD87 f 26.9172 0.6021 28.1015 25.7329
BXD87 m 26.9318 0.6021 28.1161 25.7475
BXD89 f 26.9171 0.6021 28.1014 25.7328
BXD89 m 26.5418 0.6021 27.7261 25.3575
BXD90 f 23.617 0.7773 25.1459 22.0881
BXD90 m 23.8115 0.7773 25.3404 22.2826
BXD96 f 24.9734 0.6021 26.1577 23.7892
BXD96 m 26.359 0.6021 27.5433 25.1747
BXD97 f 25.8539 0.6021 27.0382 24.6696
BXD97 m 27.9324 0.6732 29.2565 26.6084
BXD98 f 26.1804 0.952 28.0529 24.3079
BXD98 m 26.251 0.6732 27.5751 24.927
C57BL/6J f 24.6584 0.6021 25.8426 23.4741
C57BL/6J m 24.7372 0.6021 25.9214 23.5529
DBA/2J f 26.2401 0.6021 27.4244 25.0558
DBA/2J m 27.9456 0.6021 29.1299 26.7614


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 26.3128 0.4258 27.1502 25.4754
BXD101 both 26.1538 0.5141 27.1651 25.1426
BXD102 both 25.4189 0.4258 26.2563 24.5815
BXD11 both 26.0162 0.4258 26.8536 25.1788
BXD13 both 24.6524 0.4258 25.4898 23.815
BXD14 both 26.9291 0.4258 27.7665 26.0917
BXD15 both 26.4136 0.4258 27.251 25.5761
BXD16 both 25.5407 0.4258 26.3781 24.7033
BXD2 both 28.1132 0.4258 28.9506 27.2757
BXD21 both 25.1022 0.4076 25.904 24.3005
BXD27 both 27.3611 0.4258 28.1985 26.5236
BXD28 both 27.3255 0.4258 28.1629 26.488
BXD31 both 26.292 0.4516 27.1802 25.4038
BXD32 both 25.8271 0.4258 26.6645 24.9897
BXD39 both 26.4264 0.4258 27.2638 25.589
BXD40 both 25.4279 0.4258 26.2653 24.5904
BXD42 both 24.4855 0.4258 25.3229 23.6481
BXD43 both 27.6111 0.4258 28.4485 26.7737
BXD44 both 25.6212 0.4258 26.4586 24.7838
BXD48 both 26.1103 0.4258 26.9477 25.2728
BXD49 both 25.7569 0.4516 26.6451 24.8687
BXD50 both 25.9431 0.4258 26.7805 25.1057
BXD51 both 26.6481 0.4258 27.4856 25.8107
BXD6 both 25.8495 0.4516 26.7377 24.9613
BXD61 both 24.2042 0.4258 25.0416 23.3668
BXD62 both 25.1919 0.4258 26.0293 24.3545
BXD65 both 24.6191 0.4916 25.586 23.6521
BXD66 both 25.9504 0.6732 27.2745 24.6263
BXD68 both 27.3159 0.6145 28.5246 26.1072
BXD69 both 25.6978 0.4516 26.586 24.8096
BXD70 both 26.3587 0.4258 27.1961 25.5213
BXD73 both 25.865 0.4258 26.7024 25.0276
BXD75 both 25.8305 0.4258 26.6679 24.9931
BXD77 both 26.6545 0.6732 27.9786 25.3304
BXD8 both 22.8454 0.4258 23.6828 22.008
BXD80 both 28.1667 0.4258 29.0041 27.3292
BXD81 both 25.125 0.4258 25.9624 24.2876
BXD84 both 26.0308 0.4258 26.8682 25.1934
BXD85 both 26.8207 0.6732 28.1448 25.4967
BXD86 both 26.6698 0.4516 27.558 25.7816
BXD87 both 26.9245 0.4258 27.7619 26.0871
BXD89 both 26.7294 0.4258 27.5668 25.892
BXD90 both 23.7143 0.5496 24.7954 22.6332
BXD96 both 25.6662 0.4258 26.5036 24.8288
BXD97 both 26.8932 0.4516 27.7814 26.005
BXD98 both 26.2157 0.583 27.3624 25.069
C57BL/6J both 24.6978 0.4258 25.5352 23.8603
DBA/2J both 27.0929 0.4258 27.9303 26.2555




  GWAS USING LINEAR MIXED MODELS