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Project measure / variable:   Crusio1   pyr_pct_mean

ID, description, units MPD:62069   pyr_pct_mean   percentage of hippocampus that is stratum pyramidale   [%]  mean  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is stratum pyramidale mean



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means15.645   % 15.691   %
Median of the strain means15.844   % 15.715   %
SD of the strain means± 1.0623 ± 0.89458
Coefficient of variation (CV)0.0679 0.057
Min–max range of strain means12.469   –   18.407   % 13.691   –   17.856   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0125 0.0125 0.0087 0.9257
strain 47 262.3784 5.5825 3.8939 < 0.0001
sex:strain 47 45.1324 0.9603 0.6698 0.9528
Residuals 343 491.7433 1.4337


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 12.469 0.0   1   0.0 0.0 12.46852448, 12.46852448 -2.99
BXD1 m 13.691 0.0   1   0.0 0.0 13.69053972, 13.69053972 -2.24
BXD100 f 15.532 0.93767   5 0.41934 0.0604 14.73393842, 16.95512857 -0.11
BXD100 m 15.716 1.0788   5 0.48245 0.0686 14.43375927, 17.30784144 0.03
BXD101 f 15.691 0.77544   3 0.4477 0.0494 14.92360866, 16.47426159 0.04
BXD101 m 15.686 1.5666   4 0.78332 0.0999 14.37340338, 17.81254977 -0.01
BXD102 f 15.932 1.1029   5 0.49324 0.0692 14.30433658, 17.29087023 0.27
BXD102 m 15.901 1.5309   5 0.68462 0.0963 13.80212734, 17.95974632 0.23
BXD11 f 15.91 1.2547   5 0.56114 0.0789 14.1810483, 17.31879782 0.25
BXD11 m 15.75 1.2672   5 0.56671 0.0805 13.80182884, 17.28678581 0.07
BXD13 f 15.844 0.96868   5 0.43321 0.0611 14.84724422, 17.32134326 0.19
BXD13 m 16.145 1.5875   5 0.70997 0.0983 14.41646004, 17.86256352 0.51
BXD14 f 14.662 1.1075   5 0.49529 0.0755 13.21180492, 15.81983762 -0.93
BXD14 m 15.422 1.1151   5 0.49871 0.0723 14.40780648, 17.26453736 -0.3
BXD15 f 15.962 1.1712   5 0.52379 0.0734 14.92775099, 17.80324131 0.3
BXD15 m 16.148 0.70643   5 0.31592 0.0437 15.35069047, 16.88246955 0.51
BXD16 f 16.348 0.61095   5 0.27323 0.0374 15.33826331, 16.87408102 0.66
BXD16 m 16.058 0.76572   5 0.34244 0.0477 15.26194401, 17.07510451 0.41
BXD18 f 15.993 0.0   1   0.0 0.0 15.99345403, 15.99345403 0.33
BXD18 m 17.433 0.0   1   0.0 0.0 17.43258267, 17.43258267 1.95
BXD19 f 15.874 0.0   1   0.0 0.0 15.87446819, 15.87446819 0.22
BXD19 m 14.578 0.0   1   0.0 0.0 14.57760395, 14.57760395 -1.24
BXD2 f 14.752 1.2731   5 0.56936 0.0863 12.66447085, 15.87698069 -0.84
BXD2 m 15.193 0.95094   5 0.42528 0.0626 13.79002975, 16.0340171 -0.56
BXD21 f 16.534 0.42046   5 0.18804 0.0254 15.94034152, 16.9890405 0.84
BXD21 m 16.662 1.3644   6 0.55703 0.0819 14.87042233, 18.63910403 1.09
BXD27 f 17.026 0.94255   5 0.42152 0.0554 16.22819063, 18.61397263 1.3
BXD27 m 16.137 1.2325   5 0.55118 0.0764 14.06984649, 17.13386364 0.5
BXD28 f 16.15 1.0404   5 0.46527 0.0644 15.05873593, 17.55151889 0.48
BXD28 m 16.158 0.63764   5 0.28516 0.0395 15.65191519, 17.21921004 0.52
BXD31 f 16.436 1.2379   5 0.55361 0.0753 14.84487969, 18.13114364 0.74
BXD31 m 15.691 0.49435   4 0.24717 0.0315 15.07616401, 16.28662172 0.0
BXD32 f 13.752 1.1832   5 0.52916 0.086 12.06336859, 15.00125258 -1.78
BXD32 m 14.863 1.5885   5 0.71039 0.1069 12.39602409, 16.62220706 -0.93
BXD33 m 15.327 0.0   1   0.0 0.0 15.32686783, 15.32686783 -0.41
BXD34 f 15.299 0.0   1   0.0 0.0 15.29866668, 15.29866668 -0.33
BXD34 m 17.536 0.0   1   0.0 0.0 17.53588549, 17.53588549 2.06
BXD39 f 15.389 0.87191   5 0.38993 0.0567 14.51951083, 16.48692656 -0.24
BXD39 m 16.434 1.8163   5 0.81229 0.1105 14.5267752, 18.65148588 0.83
BXD40 f 16.099 1.4075   5 0.62946 0.0874 13.60736007, 17.02782202 0.43
BXD40 m 15.902 1.2124   5 0.54219 0.0762 14.33249796, 17.48093629 0.24
BXD42 f 16.363 1.3827   5 0.61837 0.0845 14.63930431, 17.88658196 0.68
BXD42 m 15.892 1.132   5 0.50625 0.0712 14.54237453, 17.23110644 0.22
BXD43 f 16.019 1.546   5 0.69138 0.0965 14.40352186, 17.6997361 0.35
BXD43 m 15.377 1.1884   5 0.53147 0.0773 13.68678677, 16.656926 -0.35
BXD44 f 15.145 1.4742   5 0.6593 0.0973 12.98419084, 16.95165557 -0.47
BXD44 m 15.326 0.81403   5 0.36405 0.0531 14.04213765, 16.27844106 -0.41
BXD48 f 15.048 1.1619   5 0.51961 0.0772 13.75726349, 16.46393742 -0.56
BXD48 m 14.522 1.3625   5 0.60935 0.0938 12.35381228, 15.87861737 -1.31
BXD49 f 14.773 1.6078   4 0.80388 0.1088 13.32699662, 16.76486575 -0.82
BXD49 m 15.436 1.1563   5 0.5171 0.0749 13.80013725, 16.62101833 -0.29
BXD50 f 15.405 1.0504   5 0.46977 0.0682 14.07259787, 16.3957589 -0.23
BXD50 m 15.541 1.506   5 0.67348 0.0969 14.5244168, 18.09466171 -0.17
BXD51 f 16.59 1.5645   5 0.69966 0.0943 14.50687451, 18.2873101 0.89
BXD51 m 16.318 0.88209   5 0.39448 0.0541 15.3290107, 17.22929539 0.7
BXD6 f 15.065 1.0301   5 0.46068 0.0684 14.01561827, 16.40283181 -0.55
BXD6 m 15.365 1.464   4 0.73201 0.0953 14.06691385, 16.68945015 -0.36
BXD61 f 16.827 1.1967   5 0.5352 0.0711 15.58814411, 18.36092633 1.11
BXD61 m 16.459 0.76157   5 0.34059 0.0463 15.72066825, 17.37522618 0.86
BXD62 f 16.01 1.2685   5 0.56731 0.0792 14.60259004, 17.77082475 0.34
BXD62 m 16.98 1.4789   5 0.66139 0.0871 14.56486437, 18.32233672 1.44
BXD65 f 17.28 1.5445   3 0.89169 0.0894 15.61439827, 18.66450938 1.54
BXD65 m 15.512 0.8868   5 0.39659 0.0572 14.71349372, 17.013323 -0.2
BXD66 f 13.828 1.3248   2   0.9368 0.0958 12.89083755, 14.76443194 -1.71
BXD66 m 15.214 0.45421   2   0.32117 0.0299 14.8925801, 15.53492883 -0.53
BXD68 f 15.158 0.65144   2   0.46063 0.043 14.69782493, 15.61909423 -0.46
BXD68 m 16.189 1.137   3 0.65645 0.0702 14.87857343, 16.91923443 0.56
BXD69 f 18.407 2.5503   4 1.2752 0.1386 14.63896258, 20.1420441 2.6
BXD69 m 17.856 0.7089   5 0.31703 0.0397 17.1148028, 19.03258475 2.42
BXD70 f 16.932 0.72773   5 0.32545 0.043 15.93058702, 17.78037665 1.21
BXD70 m 16.341 1.7986   5 0.80437 0.1101 13.40024612, 18.06137845 0.73
BXD71 m 15.037 0.0   1   0.0 0.0 15.03688363, 15.03688363 -0.73
BXD73 f 14.587 1.6556   5 0.7404 0.1135 12.05846502, 16.14250747 -1.0
BXD73 m 14.704 0.68626   5 0.3069 0.0467 13.82816478, 15.57049551 -1.1
BXD75 f 16.388 0.92363   5 0.41306 0.0564 15.00072998, 17.30213624 0.7
BXD75 m 16.118 0.99539   5 0.44515 0.0618 14.86608679, 17.38265522 0.48
BXD77 f 15.125 0.30299   2   0.21424 0.02 14.91025902, 15.33874578 -0.49
BXD77 m 14.231 0.28218   2   0.19953 0.0198 14.03131259, 14.43037217 -1.63
BXD8 f 16.19 1.3893   5 0.62133 0.0858 14.50273821, 17.82471988 0.51
BXD8 m 16.128 1.936   5 0.86581 0.12 13.02840259, 18.34818757 0.49
BXD80 f 16.313 1.3369   5 0.59788 0.082 14.65521018, 18.23363981 0.63
BXD80 m 16.147 0.65985   5 0.29509 0.0409 15.33992635, 17.01552379 0.51
BXD81 f 14.858 1.251   5 0.55946 0.0842 13.43322989, 16.75186409 -0.74
BXD81 m 15.333 1.211   5 0.54156 0.079 14.07806038, 16.94971791 -0.4
BXD84 f 16.318 1.1295   5 0.50514 0.0692 15.08675507, 17.51709527 0.63
BXD84 m 15.715 0.92405   5 0.41325 0.0588 14.93640087, 17.30979158 0.03
BXD85 f 13.868 0.64933   2   0.45914 0.0468 13.40908076, 14.32736928 -1.67
BXD85 m 13.79 1.2437   2   0.8794 0.0902 12.91106869, 14.66987244 -2.13
BXD86 f 15.77 0.8153   5 0.36461 0.0517 14.83429819, 16.94343256 0.12
BXD86 m 15.459 0.7166   4 0.3583 0.0464 14.51139567, 16.22538644 -0.26
BXD87 f 15.019 0.62159   5 0.27798 0.0414 14.33502618, 15.75323959 -0.59
BXD87 m 15.529 1.2558   5 0.56159 0.0809 14.21901333, 17.3332457 -0.18
BXD89 f 17.552 0.90462   5 0.40456 0.0515 16.52262425, 19.01295152 1.8
BXD89 m 17.574 0.80471   5 0.35988 0.0458 16.39614018, 18.66754668 2.1
BXD90 f 13.904 1.0548   3 0.60899 0.0759 12.87322673, 14.98124916 -1.64
BXD90 m 14.341 0.16564   3 0.09563 0.0116 14.14991273, 14.43862014 -1.51
BXD92 f 14.515 0.0   1   0.0 0.0 14.51468947, 14.51468947 -1.06
BXD92 m 14.412 0.0   1   0.0 0.0 14.41192285, 14.41192285 -1.43
BXD96 f 15.598 1.5937   5 0.71271 0.1022 14.21025039, 18.3091734 -0.04
BXD96 m 16.353 1.1539   5 0.51606 0.0706 14.62797726, 17.47424779 0.74
BXD97 f 16.725 0.58327   5 0.26084 0.0349 15.82031678, 17.42427541 1.02
BXD97 m 16.023 0.4593   4 0.22965 0.0287 15.65854587, 16.66711056 0.37
BXD98 f 14.539 2.8118   2   1.9882 0.1934 12.55122909, 16.52771819 -1.04
BXD98 m 15.343 1.98   4 0.99001 0.1291 12.59110782, 17.1109013 -0.39
C57BL/6J f 16.092 0.9023   5 0.40352 0.0561 14.60013805, 16.82857043 0.42
C57BL/6J m 14.232 0.76552   5 0.34235 0.0538 13.37047261, 15.37858063 -1.63
DBA/2J f 15.321 1.2327   5 0.55128 0.0805 13.72765322, 16.62794114 -0.31
DBA/2J m 15.796 1.2302   5 0.55018 0.0779 14.39800596, 17.74797513 0.12


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 15.5324 0.5355 16.5857 14.4792
BXD100 m 15.7165 0.5355 16.7697 14.6632
BXD101 f 15.6914 0.6913 17.0511 14.3317
BXD101 m 15.6865 0.5987 16.864 14.509
BXD102 f 15.9316 0.5355 16.9848 14.8783
BXD102 m 15.9007 0.5355 16.9539 14.8474
BXD11 f 15.9098 0.5355 16.963 14.8565
BXD11 m 15.7503 0.5355 16.8036 14.6971
BXD13 f 15.8435 0.5355 16.8967 14.7903
BXD13 m 16.1447 0.5355 17.198 15.0915
BXD14 f 14.6616 0.5355 15.7148 13.6084
BXD14 m 15.4219 0.5355 16.4751 14.3687
BXD15 f 15.9618 0.5355 17.015 14.9086
BXD15 m 16.1481 0.5355 17.2014 15.0949
BXD16 f 16.3478 0.5355 17.401 15.2946
BXD16 m 16.0577 0.5355 17.1109 15.0045
BXD2 f 14.7522 0.5355 15.8054 13.699
BXD2 m 15.1928 0.5355 16.246 14.1396
BXD21 f 16.5341 0.5355 17.5873 15.4809
BXD21 m 16.6619 0.4888 17.6234 15.7004
BXD27 f 17.0258 0.5355 18.079 15.9726
BXD27 m 16.1366 0.5355 17.1898 15.0834
BXD28 f 16.15 0.5355 17.2032 15.0968
BXD28 m 16.158 0.5355 17.2112 15.1048
BXD31 f 16.4363 0.5355 17.4896 15.3831
BXD31 m 15.6913 0.5987 16.8688 14.5138
BXD32 f 13.752 0.5355 14.8052 12.6988
BXD32 m 14.8632 0.5355 15.9164 13.81
BXD39 f 15.3894 0.5355 16.4426 14.3362
BXD39 m 16.4345 0.5355 17.4877 15.3813
BXD40 f 16.0994 0.5355 17.1526 15.0461
BXD40 m 15.9022 0.5355 16.9554 14.8489
BXD42 f 16.3632 0.5355 17.4165 15.31
BXD42 m 15.8924 0.5355 16.9457 14.8392
BXD43 f 16.0192 0.5355 17.0725 14.966
BXD43 m 15.3769 0.5355 16.4301 14.3237
BXD44 f 15.1454 0.5355 16.1986 14.0922
BXD44 m 15.3258 0.5355 16.3791 14.2726
BXD48 f 15.0476 0.5355 16.1008 13.9944
BXD48 m 14.5218 0.5355 15.575 13.4686
BXD49 f 14.7727 0.5987 15.9502 13.5952
BXD49 m 15.4357 0.5355 16.4889 14.3824
BXD50 f 15.4051 0.5355 16.4583 14.3519
BXD50 m 15.5407 0.5355 16.594 14.4875
BXD51 f 16.59 0.5355 17.6432 15.5368
BXD51 m 16.3181 0.5355 17.3713 15.2649
BXD6 f 15.0652 0.5355 16.1184 14.0119
BXD6 m 15.3653 0.5987 16.5428 14.1877
BXD61 f 16.8273 0.5355 17.8805 15.7741
BXD61 m 16.4591 0.5355 17.5124 15.4059
BXD62 f 16.0103 0.5355 17.0635 14.9571
BXD62 m 16.9805 0.5355 18.0337 15.9273
BXD65 f 17.2803 0.6913 18.64 15.9206
BXD65 m 15.5117 0.5355 16.5649 14.4585
BXD66 f 13.8276 0.8467 15.4929 12.1623
BXD66 m 15.2138 0.8467 16.879 13.5485
BXD68 f 15.1585 0.8467 16.8238 13.4932
BXD68 m 16.1886 0.6913 17.5483 14.8288
BXD69 f 18.4074 0.5987 19.5849 17.2298
BXD69 m 17.8562 0.5355 18.9095 16.803
BXD70 f 16.932 0.5355 17.9852 15.8787
BXD70 m 16.3407 0.5355 17.3939 15.2875
BXD73 f 14.5866 0.5355 15.6398 13.5334
BXD73 m 14.7044 0.5355 15.7576 13.6512
BXD75 f 16.3876 0.5355 17.4408 15.3344
BXD75 m 16.1177 0.5355 17.1709 15.0645
BXD77 f 15.1245 0.8467 16.7898 13.4592
BXD77 m 14.2308 0.8467 15.8961 12.5656
BXD8 f 16.1896 0.5355 17.2428 15.1364
BXD8 m 16.1278 0.5355 17.1811 15.0746
BXD80 f 16.3134 0.5355 17.3666 15.2601
BXD80 m 16.1472 0.5355 17.2004 15.094
BXD81 f 14.8578 0.5355 15.911 13.8046
BXD81 m 15.3325 0.5355 16.3857 14.2793
BXD84 f 16.3178 0.5355 17.371 15.2646
BXD84 m 15.7149 0.5355 16.7681 14.6617
BXD85 f 13.8682 0.8467 15.5335 12.2029
BXD85 m 13.7905 0.8467 15.4558 12.1252
BXD86 f 15.7698 0.5355 16.823 14.7166
BXD86 m 15.4592 0.5987 16.6367 14.2817
BXD87 f 15.0193 0.5355 16.0726 13.9661
BXD87 m 15.5287 0.5355 16.582 14.4755
BXD89 f 17.5524 0.5355 18.6056 16.4991
BXD89 m 17.5743 0.5355 18.6276 16.5211
BXD90 f 13.9036 0.6913 15.2633 12.5439
BXD90 m 14.3412 0.6913 15.7009 12.9815
BXD96 f 15.5975 0.5355 16.6508 14.5443
BXD96 m 16.3531 0.5355 17.4063 15.2999
BXD97 f 16.7247 0.5355 17.7779 15.6715
BXD97 m 16.0228 0.5987 17.2003 14.8452
BXD98 f 14.5395 0.8467 16.2048 12.8742
BXD98 m 15.3425 0.5987 16.52 14.165
C57BL/6J f 16.0921 0.5355 17.1454 15.0389
C57BL/6J m 14.2315 0.5355 15.2847 13.1783
DBA/2J f 15.3215 0.5355 16.3747 14.2683
DBA/2J m 15.7962 0.5355 16.8495 14.743


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 15.6244 0.3786 16.3692 14.8797
BXD101 both 15.6889 0.4572 16.5883 14.7896
BXD102 both 15.9161 0.3786 16.6609 15.1714
BXD11 both 15.83 0.3786 16.5748 15.0853
BXD13 both 15.9941 0.3786 16.7389 15.2494
BXD14 both 15.0418 0.3786 15.7865 14.297
BXD15 both 16.055 0.3786 16.7997 15.3102
BXD16 both 16.2028 0.3786 16.9475 15.458
BXD2 both 14.9725 0.3786 15.7172 14.2277
BXD21 both 16.598 0.3625 17.311 15.885
BXD27 both 16.5812 0.3786 17.326 15.8365
BXD28 both 16.154 0.3786 16.8987 15.4093
BXD31 both 16.0638 0.4016 16.8537 15.2739
BXD32 both 14.3076 0.3786 15.0523 13.5628
BXD39 both 15.9119 0.3786 16.6567 15.1672
BXD40 both 16.0008 0.3786 16.7455 15.256
BXD42 both 16.1278 0.3786 16.8726 15.3831
BXD43 both 15.6981 0.3786 16.4428 14.9533
BXD44 both 15.2356 0.3786 15.9804 14.4909
BXD48 both 14.7847 0.3786 15.5294 14.04
BXD49 both 15.1042 0.4016 15.8941 14.3143
BXD50 both 15.4729 0.3786 16.2177 14.7282
BXD51 both 16.454 0.3786 17.1988 15.7093
BXD6 both 15.2152 0.4016 16.0051 14.4253
BXD61 both 16.6432 0.3786 17.388 15.8985
BXD62 both 16.4954 0.3786 17.2401 15.7507
BXD65 both 16.396 0.4372 17.256 15.5361
BXD66 both 14.5207 0.5987 15.6982 13.3432
BXD68 both 15.6735 0.5465 16.7484 14.5986
BXD69 both 18.1318 0.4016 18.9217 17.3419
BXD70 both 16.6363 0.3786 17.3811 15.8916
BXD73 both 14.6455 0.3786 15.3903 13.9008
BXD75 both 16.2526 0.3786 16.9974 15.5079
BXD77 both 14.6777 0.5987 15.8552 13.5001
BXD8 both 16.1587 0.3786 16.9035 15.414
BXD80 both 16.2303 0.3786 16.975 15.4855
BXD81 both 15.0951 0.3786 15.8399 14.3504
BXD84 both 16.0163 0.3786 16.7611 15.2716
BXD85 both 13.8293 0.5987 15.0069 12.6518
BXD86 both 15.6145 0.4016 16.4044 14.8246
BXD87 both 15.274 0.3786 16.0188 14.5293
BXD89 both 17.5634 0.3786 18.3081 16.8186
BXD90 both 14.1224 0.4888 15.0839 13.1609
BXD96 both 15.9753 0.3786 16.7201 15.2306
BXD97 both 16.3737 0.4016 17.1637 15.5838
BXD98 both 14.941 0.5185 15.9608 13.9212
C57BL/6J both 15.1618 0.3786 15.9066 14.4171
DBA/2J both 15.5589 0.3786 16.3036 14.8141




  GWAS USING LINEAR MIXED MODELS