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Project measure / variable:   Crusio1   hilus_pct_L

ID, description, units MPD:62057   hilus_pct_L   percentage of hippocampus that is hilus   [%]  left  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 12-16wks
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of hippocampus that is hilus left



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested53 strains55 strains
Mean of the strain means9.3586   % 9.4665   %
Median of the strain means9.4932   % 9.3306   %
SD of the strain means± 1.0944 ± 1.1104
Coefficient of variation (CV)0.1169 0.1173
Min–max range of strain means7.2102   –   11.51   % 7.0103   –   12.852   %
Mean sample size per strain4.2   mice 4.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.7644 4.7644 3.0489 0.0817
strain 47 475.5297 10.1177 6.4747 < 0.0001
sex:strain 47 53.4343 1.1369 0.7275 0.9083
Residuals 343 535.9891 1.5627


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 10.979 0.0   1   0.0 0.0 10.97888303, 10.97888303 1.48
BXD1 m 9.3306 0.0   1   0.0 0.0 9.330570186, 9.330570186 -0.12
BXD100 f 7.2682 0.80023   5 0.35787 0.1101 6.273140277, 8.339294086 -1.91
BXD100 m 7.3632 1.4328   5 0.64076 0.1946 5.813952803, 8.78164469 -1.89
BXD101 f 9.123 1.0461   3 0.60394 0.1147 7.958358162, 9.982725651 -0.22
BXD101 m 9.2896 1.32   4 0.66001 0.1421 7.753549231, 10.47046833 -0.16
BXD102 f 11.51 1.5924   5 0.71216 0.1383 9.778849618, 14.04222383 1.97
BXD102 m 10.384 1.3968   5 0.62465 0.1345 7.960512766, 11.53236209 0.83
BXD11 f 9.631 0.78703   5 0.35197 0.0817 8.999066292, 10.67693162 0.25
BXD11 m 9.2782 1.233   5 0.55142 0.1329 7.954621164, 10.60687403 -0.17
BXD13 f 11.331 1.1037   5 0.49359 0.0974 10.35549936, 12.57856214 1.8
BXD13 m 12.081 0.94835   5 0.42411 0.0785 11.00984298, 13.42803274 2.35
BXD14 f 10.227 1.5234   5 0.68127 0.149 9.207418224, 12.82067165 0.79
BXD14 m 9.9153 1.021   5 0.4566 0.103 8.375379258, 11.00705128 0.4
BXD15 f 8.443 1.0531   5 0.47097 0.1247 6.987847222, 9.541278177 -0.84
BXD15 m 7.9788 0.54848   5 0.24529 0.0687 7.161282634, 8.552140177 -1.34
BXD16 f 9.8198 1.4597   5 0.65278 0.1486 8.623145788, 11.91766998 0.42
BXD16 m 8.7988 1.4448   5 0.64613 0.1642 7.340085456, 10.84782299 -0.6
BXD18 f 9.0745 0.0   1   0.0 0.0 9.074539079, 9.074539079 -0.26
BXD18 m 8.7958 0.0   1   0.0 0.0 8.795763775, 8.795763775 -0.6
BXD19 f 8.799 0.0   1   0.0 0.0 8.799008946, 8.799008946 -0.51
BXD19 m 10.761 0.0   1   0.0 0.0 10.76128509, 10.76128509 1.17
BXD2 f 8.6518 0.53479   5 0.23916 0.0618 7.836596511, 9.174667144 -0.65
BXD2 m 8.6918 0.62109   5 0.27776 0.0715 7.940583654, 9.477762353 -0.7
BXD21 f 9.9562 1.4033   5 0.62759 0.141 8.29737429, 11.34775973 0.55
BXD21 m 9.463 0.91   6 0.3715 0.0962 8.648965789, 10.84782299 0.0
BXD27 f 8.712 1.5068   5 0.67386 0.173 7.096564109, 10.60317772 -0.59
BXD27 m 10.409 1.9312   5 0.86367 0.1855 8.591347919, 13.59311317 0.85
BXD28 f 10.28 1.0638   5 0.47575 0.1035 8.73415583, 11.72632871 0.84
BXD28 m 9.7583 1.2088   5 0.5406 0.1239 7.829150366, 10.77933125 0.26
BXD31 f 9.4926 1.6031   5 0.71693 0.1689 8.236807148, 12.28805579 0.12
BXD31 m 11.104 2.2408   4 1.1204 0.2018 8.449510869, 13.90366759 1.47
BXD32 f 9.3661 0.98611   5 0.441 0.1053 8.150696748, 10.63517817 0.01
BXD32 m 9.0811 0.71899   5 0.32154 0.0792 8.125780719, 9.916240104 -0.35
BXD33 m 8.7642 0.0   1   0.0 0.0 8.764246507, 8.764246507 -0.63
BXD34 f 7.4342 0.0   1   0.0 0.0 7.434244501, 7.434244501 -1.76
BXD34 m 7.0103 0.0   1   0.0 0.0 7.010253573, 7.010253573 -2.21
BXD39 f 9.6536 0.94164   5 0.42111 0.0975 8.223682836, 10.46458952 0.27
BXD39 m 9.4908 1.0339   5 0.46238 0.1089 8.043427674, 10.95659824 0.02
BXD40 f 10.186 1.2125   5 0.54224 0.119 8.647537064, 11.47436663 0.76
BXD40 m 10.78 1.0647   5 0.47613 0.0988 9.664715153, 12.04363466 1.18
BXD42 f 10.7 0.96713   5 0.43251 0.0904 9.185638264, 11.77644208 1.23
BXD42 m 10.48 1.1436   5 0.51145 0.1091 9.329732016, 12.33004327 0.91
BXD43 f 7.2102 1.1966   5 0.53512 0.166 5.930156173, 8.895340876 -1.96
BXD43 m 7.8424 0.91601   5 0.40965 0.1168 6.738698871, 9.080640601 -1.46
BXD44 f 9.8057 0.71176   5 0.31831 0.0726 9.240461965, 10.69505305 0.41
BXD44 m 9.4532 1.2642   5 0.56536 0.1337 8.062463333, 11.45416112 -0.01
BXD48 f 9.524 1.4912   5 0.66686 0.1566 7.283848779, 11.13791629 0.15
BXD48 m 9.4873 0.75067   5 0.33571 0.0791 8.495661126, 10.37978754 0.02
BXD49 f 10.401 1.2447   4 0.62234 0.1197 8.855157867, 11.79406995 0.95
BXD49 m 10.897 1.7936   5 0.80212 0.1646 8.596525298, 13.57412447 1.29
BXD50 f 9.0603 1.041   5 0.46557 0.1149 7.413832365, 10.17463524 -0.27
BXD50 m 10.358 0.2923   5 0.13072 0.0282 9.967490797, 10.77898791 0.8
BXD51 f 7.9209 0.71605   5 0.32023 0.0904 7.225108713, 8.764630545 -1.31
BXD51 m 8.5599 0.9944   5 0.44471 0.1162 7.906152606, 10.24761557 -0.82
BXD6 f 9.7124 1.1853   5 0.53007 0.122 7.849294424, 10.86227796 0.32
BXD6 m 10.569 0.7904   4 0.3952 0.0748 9.719947297, 11.59358707 0.99
BXD61 f 11.159 0.77596   5 0.34702 0.0695 10.53002575, 12.45042332 1.65
BXD61 m 10.722 1.2331   5 0.55148 0.115 9.849970014, 12.86317227 1.13
BXD62 f 11.044 2.035   5 0.9101 0.1843 8.311084894, 13.12081003 1.54
BXD62 m 10.876 1.6222   5 0.72546 0.1492 8.621359494, 13.06075353 1.27
BXD65 f 10.373 0.6207   3 0.35836 0.0598 9.82244335, 11.04554807 0.93
BXD65 m 10.365 1.0012   5 0.44773 0.0966 9.015053032, 11.49225889 0.81
BXD66 f 8.0021 1.087   2   0.76863 0.1358 7.233507008, 8.770776927 -1.24
BXD66 m 9.0177 1.7578   2   1.243 0.1949 7.774746339, 10.26071879 -0.4
BXD68 f 9.6985 1.0895   2   0.77037 0.1123 8.928176049, 10.46892194 0.31
BXD68 m 9.2157 0.75902   3 0.43822 0.0824 8.393830477, 9.890306385 -0.23
BXD69 f 9.4932 1.4008   4 0.70039 0.1476 7.855903514, 11.19140328 0.12
BXD69 m 10.231 1.3889   5 0.62112 0.1358 9.105036941, 12.54974443 0.69
BXD70 f 9.548 1.3227   5 0.59155 0.1385 8.043102134, 11.6283605 0.17
BXD70 m 10.083 1.5023   5 0.67184 0.149 8.391443493, 11.49219769 0.56
BXD71 m 8.3383 0.0   1   0.0 0.0 8.338278827, 8.338278827 -1.02
BXD73 f 7.9865 1.5368   5 0.68726 0.1924 5.992909084, 9.274456639 -1.25
BXD73 m 9.0876 1.2436   5 0.55615 0.1368 7.826254614, 10.64235606 -0.34
BXD75 f 8.4353 0.52257   5 0.2337 0.062 7.951732537, 9.097261003 -0.84
BXD75 m 8.5235 1.4492   5 0.64811 0.17 7.018317432, 10.56465011 -0.85
BXD77 f 8.9241 1.4969   2   1.0585 0.1677 7.865626054, 9.982566941 -0.4
BXD77 m 7.9453 0.29145   2   0.20609 0.0367 7.739187129, 8.151362854 -1.37
BXD8 f 9.8465 0.82432   5 0.36865 0.0837 8.549452305, 10.80516623 0.45
BXD8 m 9.4723 1.9258   5 0.86124 0.2033 6.985957545, 12.17273621 0.01
BXD80 f 8.7759 0.8652   5 0.38693 0.0986 7.300350751, 9.500141254 -0.53
BXD80 m 9.6443 0.56174   5 0.25122 0.0582 8.807955721, 10.31590629 0.16
BXD81 f 9.9702 1.4166   5 0.63352 0.1421 8.345403963, 11.77429083 0.56
BXD81 m 10.035 1.6574   5 0.74123 0.1652 7.847949394, 12.41589834 0.51
BXD84 f 9.4038 0.973   5 0.43514 0.1035 7.775036298, 10.21075058 0.04
BXD84 m 9.2094 1.1271   5 0.50403 0.1224 8.016213303, 10.73022 -0.23
BXD85 f 10.097 0.74958   2   0.53004 0.0742 9.56746238, 10.6275328 0.67
BXD85 m 9.6312 1.8724   2   1.324 0.1944 8.307199328, 10.95512019 0.15
BXD86 f 7.5295 0.9045   5 0.40451 0.1201 6.143410986, 8.510315018 -1.67
BXD86 m 8.9411 0.5618   4 0.2809 0.0628 8.269101544, 9.573695635 -0.47
BXD87 f 8.7723 0.97888   5 0.43777 0.1116 7.669903697, 9.897101367 -0.54
BXD87 m 8.7439 0.86344   5 0.38614 0.0987 7.686695838, 9.974823687 -0.65
BXD89 f 8.3984 0.66958   5 0.29945 0.0797 7.788165154, 9.488561162 -0.88
BXD89 m 8.5575 0.73851   5 0.33027 0.0863 7.495890803, 9.507154198 -0.82
BXD90 f 8.8885 1.8273   3 1.055 0.2056 7.217208102, 10.83946987 -0.43
BXD90 m 8.995 0.89146   3 0.51468 0.0991 7.982887179, 9.663685977 -0.42
BXD92 f 9.9664 0.0   1   0.0 0.0 9.966439244, 9.966439244 0.56
BXD92 m 9.792 0.0   1   0.0 0.0 9.791971313, 9.791971313 0.29
BXD96 f 7.8467 1.1521   5 0.51524 0.1468 6.296413907, 9.212373209 -1.38
BXD96 m 8.6393 0.83387   5 0.37292 0.0965 7.491724885, 9.795170529 -0.74
BXD97 f 7.699 1.5073   5 0.67406 0.1958 5.306189893, 9.406272204 -1.52
BXD97 m 8.0509 0.29769   4 0.14884 0.037 7.752867565, 8.420727278 -1.27
BXD98 f 9.8709 3.6228   2   2.5617 0.367 7.30915993, 12.43259066 0.47
BXD98 m 9.2188 1.1144   4 0.55718 0.1209 8.084655516, 10.20922172 -0.22
C57BL/6J f 11.214 1.6816   5 0.75205 0.15 8.93659898, 12.99903906 1.7
C57BL/6J m 12.852 2.6825   5 1.1996 0.2087 9.843635413, 16.81958422 3.05
DBA/2J f 8.7915 1.829   5 0.81798 0.208 5.678954691, 10.20211992 -0.52
DBA/2J m 8.2941 1.2319   5 0.55093 0.1485 6.525797731, 9.726788731 -1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD100 f 7.2682 0.559 8.3678 6.1686
BXD100 m 7.3632 0.559 8.4628 6.2636
BXD101 f 9.123 0.7217 10.5426 7.7034
BXD101 m 9.2896 0.625 10.519 8.0603
BXD102 f 11.5104 0.559 12.61 10.4108
BXD102 m 10.3839 0.559 11.4835 9.2843
BXD11 f 9.631 0.559 10.7306 8.5314
BXD11 m 9.2782 0.559 10.3778 8.1786
BXD13 f 11.3306 0.559 12.4302 10.231
BXD13 m 12.081 0.559 13.1806 10.9814
BXD14 f 10.2268 0.559 11.3264 9.1272
BXD14 m 9.9153 0.559 11.0149 8.8157
BXD15 f 8.443 0.559 9.5426 7.3434
BXD15 m 7.9788 0.559 9.0784 6.8792
BXD16 f 9.8198 0.559 10.9194 8.7202
BXD16 m 8.7988 0.559 9.8984 7.6993
BXD2 f 8.6518 0.559 9.7514 7.5522
BXD2 m 8.6918 0.559 9.7914 7.5922
BXD21 f 9.9562 0.559 11.0558 8.8566
BXD21 m 9.463 0.5103 10.4668 8.4592
BXD27 f 8.712 0.559 9.8116 7.6124
BXD27 m 10.4093 0.559 11.5089 9.3097
BXD28 f 10.2804 0.559 11.38 9.1808
BXD28 m 9.7583 0.559 10.8579 8.6587
BXD31 f 9.4926 0.559 10.5921 8.393
BXD31 m 11.1036 0.625 12.333 9.8742
BXD32 f 9.3661 0.559 10.4657 8.2666
BXD32 m 9.0811 0.559 10.1807 7.9815
BXD39 f 9.6536 0.559 10.7531 8.554
BXD39 m 9.4908 0.559 10.5904 8.3912
BXD40 f 10.1858 0.559 11.2854 9.0862
BXD40 m 10.7804 0.559 11.88 9.6808
BXD42 f 10.6996 0.559 11.7992 9.6
BXD42 m 10.4798 0.559 11.5794 9.3802
BXD43 f 7.2102 0.559 8.3098 6.1106
BXD43 m 7.8424 0.559 8.9419 6.7428
BXD44 f 9.8057 0.559 10.9053 8.7061
BXD44 m 9.4532 0.559 10.5528 8.3536
BXD48 f 9.524 0.559 10.6236 8.4244
BXD48 m 9.4873 0.559 10.5869 8.3877
BXD49 f 10.4006 0.625 11.63 9.1713
BXD49 m 10.8967 0.559 11.9963 9.7972
BXD50 f 9.0603 0.559 10.1599 7.9607
BXD50 m 10.3577 0.559 11.4572 9.2581
BXD51 f 7.9209 0.559 9.0205 6.8213
BXD51 m 8.5599 0.559 9.6595 7.4603
BXD6 f 9.7124 0.559 10.812 8.6128
BXD6 m 10.569 0.625 11.7984 9.3397
BXD61 f 11.1592 0.559 12.2588 10.0596
BXD61 m 10.722 0.559 11.8216 9.6224
BXD62 f 11.0437 0.559 12.1433 9.9442
BXD62 m 10.8757 0.559 11.9753 9.7762
BXD65 f 10.3727 0.7217 11.7922 8.9531
BXD65 m 10.3654 0.559 11.465 9.2658
BXD66 f 8.0021 0.8839 9.7407 6.2635
BXD66 m 9.0177 0.8839 10.7563 7.2791
BXD68 f 9.6985 0.8839 11.4371 7.96
BXD68 m 9.2157 0.7217 10.6352 7.7961
BXD69 f 9.4932 0.625 10.7225 8.2638
BXD69 m 10.2306 0.559 11.3301 9.131
BXD70 f 9.548 0.559 10.6475 8.4484
BXD70 m 10.0825 0.559 11.1821 8.983
BXD73 f 7.9865 0.559 9.0861 6.887
BXD73 m 9.0876 0.559 10.1872 7.988
BXD75 f 8.4353 0.559 9.5349 7.3358
BXD75 m 8.5235 0.559 9.6231 7.4239
BXD77 f 8.9241 0.8839 10.6627 7.1855
BXD77 m 7.9453 0.8839 9.6839 6.2067
BXD8 f 9.8465 0.559 10.946 8.7469
BXD8 m 9.4723 0.559 10.5719 8.3727
BXD80 f 8.7759 0.559 9.8755 7.6763
BXD80 m 9.6443 0.559 10.7439 8.5447
BXD81 f 9.9702 0.559 11.0698 8.8706
BXD81 m 10.0347 0.559 11.1343 8.9351
BXD84 f 9.4038 0.559 10.5034 8.3042
BXD84 m 9.2094 0.559 10.309 8.1098
BXD85 f 10.0975 0.8839 11.8361 8.3589
BXD85 m 9.6312 0.8839 11.3698 7.8926
BXD86 f 7.5295 0.559 8.6291 6.4299
BXD86 m 8.9411 0.625 10.1705 7.7118
BXD87 f 8.7723 0.559 9.8719 7.6727
BXD87 m 8.7439 0.559 9.8435 7.6444
BXD89 f 8.3984 0.559 9.498 7.2988
BXD89 m 8.5575 0.559 9.6571 7.4579
BXD90 f 8.8885 0.7217 10.308 7.4689
BXD90 m 8.995 0.7217 10.4145 7.5754
BXD96 f 7.8467 0.559 8.9463 6.7471
BXD96 m 8.6393 0.559 9.7389 7.5397
BXD97 f 7.699 0.559 8.7985 6.5994
BXD97 m 8.0509 0.625 9.2802 6.8215
BXD98 f 9.8709 0.8839 11.6095 8.1323
BXD98 m 9.2188 0.625 10.4482 7.9895
C57BL/6J f 11.2138 0.559 12.3133 10.1142
C57BL/6J m 12.8524 0.559 13.952 11.7528
DBA/2J f 8.7915 0.559 9.8911 7.6919
DBA/2J m 8.2941 0.559 9.3937 7.1945


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD100 both 7.3157 0.3953 8.0932 6.5382
BXD101 both 9.2063 0.4774 10.1453 8.2674
BXD102 both 10.9471 0.3953 11.7246 10.1696
BXD11 both 9.4546 0.3953 10.2321 8.6771
BXD13 both 11.7058 0.3953 12.4833 10.9283
BXD14 both 10.071 0.3953 10.8486 9.2935
BXD15 both 8.2109 0.3953 8.9884 7.4334
BXD16 both 9.3093 0.3953 10.0868 8.5318
BXD2 both 8.6718 0.3953 9.4493 7.8943
BXD21 both 9.7096 0.3785 10.454 8.9652
BXD27 both 9.5607 0.3953 10.3382 8.7831
BXD28 both 10.0194 0.3953 10.7969 9.2418
BXD31 both 10.2981 0.4193 11.1228 9.4734
BXD32 both 9.2236 0.3953 10.0011 8.4461
BXD39 both 9.5722 0.3953 10.3497 8.7947
BXD40 both 10.4831 0.3953 11.2606 9.7056
BXD42 both 10.5897 0.3953 11.3672 9.8122
BXD43 both 7.5263 0.3953 8.3038 6.7487
BXD44 both 9.6295 0.3953 10.407 8.8519
BXD48 both 9.5057 0.3953 10.2832 8.7281
BXD49 both 10.6487 0.4193 11.4734 9.824
BXD50 both 9.709 0.3953 10.4865 8.9315
BXD51 both 8.2404 0.3953 9.0179 7.4629
BXD6 both 10.1407 0.4193 10.9654 9.316
BXD61 both 10.9406 0.3953 11.7181 10.1631
BXD62 both 10.9597 0.3953 11.7373 10.1822
BXD65 both 10.369 0.4565 11.2668 9.4712
BXD66 both 8.5099 0.625 9.7393 7.2806
BXD68 both 9.4571 0.5706 10.5794 8.3348
BXD69 both 9.8619 0.4193 10.6865 9.0372
BXD70 both 9.8153 0.3953 10.5928 9.0377
BXD73 both 8.5371 0.3953 9.3146 7.7595
BXD75 both 8.4794 0.3953 9.2569 7.7019
BXD77 both 8.4347 0.625 9.6641 7.2053
BXD8 both 9.6594 0.3953 10.4369 8.8819
BXD80 both 9.2101 0.3953 9.9876 8.4326
BXD81 both 10.0025 0.3953 10.78 9.2249
BXD84 both 9.3066 0.3953 10.0841 8.5291
BXD85 both 9.8643 0.625 11.0937 8.635
BXD86 both 8.2353 0.4193 9.06 7.4106
BXD87 both 8.7581 0.3953 9.5356 7.9806
BXD89 both 8.4779 0.3953 9.2555 7.7004
BXD90 both 8.9417 0.5103 9.9455 7.9379
BXD96 both 8.243 0.3953 9.0205 7.4655
BXD97 both 7.8749 0.4193 8.6996 7.0502
BXD98 both 9.5449 0.5413 10.6095 8.4802
C57BL/6J both 12.0331 0.3953 12.8106 11.2555
DBA/2J both 8.5428 0.3953 9.3203 7.7653




  GWAS USING LINEAR MIXED MODELS