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Project measure / variable:   Crusio1   center_time

ID, description, units MPD:62003   center_time   percentage of total time spent in center, 20 min test   [%]  
Data set, strains Crusio1   BXD w/par   55 strains     sex: both     age: 10-12wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Crusio1 - percentage of total time spent in center, 20 min test



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested54 strains55 strains
Mean of the strain means32.387   % 33.851   %
Median of the strain means32.2   % 34.6   %
SD of the strain means± 9.4417 ± 7.6667
Coefficient of variation (CV)0.2915 0.2265
Min–max range of strain means13.1   –   61.25   % 15.8   –   50.0   %
Mean sample size per strain8.4   mice 8.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 769.9288 769.9288 7.244 0.0073
strain 52 55196.6817 1061.4746 9.987 < 0.0001
sex:strain 52 6910.4158 132.8926 1.2503 0.1153
Residuals 804 85453.6726 106.2857


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
BXD1 f 39.0 7.0711   2   5.0 0.1813 34.0, 44.0 0.7
BXD1 m 32.0 2.8284   2   2.0 0.0884 30.0, 34.0 -0.24
BXD100 f 23.1 6.8386   10 2.1626 0.296 13.0, 33.0 -0.98
BXD100 m 32.0 9.4634   10 2.9926 0.2957 20.0, 49.0 -0.24
BXD101 f 23.167 8.1588   6 3.3308 0.3522 17.0, 38.0 -0.98
BXD101 m 31.375 6.9269   8 2.449 0.2208 20.0, 39.0 -0.32
BXD102 f 32.5 3.6286   10 1.1475 0.1116 27.0, 37.0 0.01
BXD102 m 30.0 4.5461   10 1.4376 0.1515 23.0, 37.0 -0.5
BXD11 f 24.3 10.698   10 3.3831 0.4403 11.0, 38.0 -0.86
BXD11 m 22.5 8.7591   10 2.7699 0.3893 5.0, 35.0 -1.48
BXD13 f 28.6 13.426   10 4.2458 0.4695 7.0, 56.0 -0.4
BXD13 m 27.1 5.7629   10 1.8224 0.2127 19.0, 35.0 -0.88
BXD14 f 46.8 11.193   10 3.5396 0.2392 24.0, 63.0 1.53
BXD14 m 47.0 10.646   10 3.3665 0.2265 21.0, 57.0 1.72
BXD15 f 24.7 13.466   10 4.2585 0.5452 9.0, 52.0 -0.81
BXD15 m 23.3 7.5285   10 2.3807 0.3231 10.0, 32.0 -1.38
BXD16 f 41.3 7.4095   10 2.3431 0.1794 28.0, 50.0 0.94
BXD16 m 34.6 12.817   10 4.053 0.3704 16.0, 52.0 0.1
BXD18 f 32.0 4.2426   2   3.0 0.1326 29.0, 35.0 -0.04
BXD18 m 34.0 8.4853   2   6.0 0.2496 28.0, 40.0 0.02
BXD19 f 32.0 4.2426   2   3.0 0.1326 29.0, 35.0 -0.04
BXD19 m 39.0 9.8995   2   7.0 0.2538 32.0, 46.0 0.67
BXD2 f 28.8 10.25   10 3.2414 0.3559 13.0, 43.0 -0.38
BXD2 m 35.6 12.411   10 3.9248 0.3486 19.0, 58.0 0.23
BXD21 f 32.9 8.8751   10 2.8065 0.2698 21.0, 47.0 0.05
BXD21 m 43.7 8.2064   10 2.5951 0.1878 30.0, 56.0 1.28
BXD27 f 25.8 14.831   10 4.6899 0.5748 9.0, 58.0 -0.7
BXD27 m 24.5 17.135   10 5.4186 0.6994 -1.22
BXD28 f 28.8 9.3666   10 2.962 0.3252 17.0, 49.0 -0.38
BXD28 m 30.6 13.492   10 4.2667 0.4409 9.0, 47.0 -0.42
BXD31 f 26.1 11.357   10 3.5915 0.4351 10.0, 44.0 -0.67
BXD31 m 39.6 13.318   10 4.2116 0.3363 15.0, 68.0 0.75
BXD32 f 28.9 12.324   10 3.8971 0.4264 14.0, 54.0 -0.37
BXD32 m 30.8 9.016   10 2.8511 0.2927 17.0, 51.0 -0.4
BXD33 f 52.0 0.0   1   0.0 0.0 52.0, 52.0 2.08
BXD33 m 50.0 0.0   1   0.0 0.0 50.0, 50.0 2.11
BXD34 f 37.5 3.5355   2   2.5 0.0943 35.0, 40.0 0.54
BXD34 m 41.5 3.5355   2   2.5 0.0852 39.0, 44.0 1.0
BXD39 f 24.9 9.769   10 3.0892 0.3923 8.0, 40.0 -0.79
BXD39 m 18.4 7.4714   10 2.3627 0.4061 10.0, 31.0 -2.02
BXD40 f 46.9 19.273   10 6.0945 0.4109 26.0, 77.0 1.54
BXD40 m 42.5 7.9896   10 2.5265 0.188 30.0, 53.0 1.13
BXD42 f 32.7 8.6545   10 2.7368 0.2647 15.0, 43.0 0.03
BXD42 m 36.1 8.0201   10 2.5362 0.2222 26.0, 54.0 0.29
BXD43 f 29.1 8.4123   10 2.6602 0.2891 10.0, 42.0 -0.35
BXD43 m 36.2 5.6135   10 1.7751 0.1551 30.0, 46.0 0.31
BXD44 f 21.6 7.5895   10 2.4 0.3514 10.0, 34.0 -1.14
BXD44 m 30.3 7.7753   10 2.4588 0.2566 16.0, 44.0 -0.46
BXD48 f 41.7 9.0437   10 2.8599 0.2169 26.0, 52.0 0.99
BXD48 m 40.6 5.7581   10 1.8209 0.1418 30.0, 49.0 0.88
BXD49 f 31.4 11.365   10 3.5938 0.3619 14.0, 55.0 -0.1
BXD49 m 35.7 7.1655   10 2.2659 0.2007 27.0, 49.0 0.24
BXD50 f 29.0 4.1633   10 1.3166 0.1436 22.0, 35.0 -0.36
BXD50 m 27.2 8.7407   10 2.7641 0.3213 5.0, 37.0 -0.87
BXD51 f 13.9 6.0818   10 1.9232 0.4375 8.0, 27.0 -1.96
BXD51 m 15.8 5.5136   10 1.7436 0.349 8.0, 26.0 -2.35
BXD6 f 22.4 9.0701   10 2.8682 0.4049 6.0, 34.0 -1.06
BXD6 m 25.2 6.941   10 2.1949 0.2754 13.0, 34.0 -1.13
BXD61 f 23.2 5.2873   10 1.672 0.2279 18.0, 33.0 -0.97
BXD61 m 26.7 6.961   10 2.2013 0.2607 19.0, 39.0 -0.93
BXD62 f 38.0 19.414   10 6.1391 0.5109 14.0, 81.0 0.59
BXD62 m 42.1 22.985   10 7.2686 0.546 17.0, 98.0 1.08
BXD65 f 37.5 8.5732   6 3.5 0.2286 25.0, 47.0 0.54
BXD65 m 36.9 6.3325   10 2.0025 0.1716 27.0, 46.0 0.4
BXD66 f 39.75 6.8496   4 3.4248 0.1723 30.0, 46.0 0.78
BXD66 m 33.5 13.675   4 6.8374 0.4082 18.0, 45.0 -0.05
BXD68 f 36.5 10.279   4 5.1397 0.2816 25.0, 50.0 0.44
BXD68 m 29.333 8.4301   6 3.4416 0.2874 20.0, 42.0 -0.59
BXD69 f 40.7 5.9451   10 1.88 0.1461 32.0, 49.0 0.88
BXD69 m 41.6 13.81   10 4.367 0.332 25.0, 75.0 1.01
BXD70 f 38.3 12.807   10 4.0498 0.3344 22.0, 67.0 0.63
BXD70 m 41.1 8.6468   10 2.7343 0.2104 31.0, 60.0 0.95
BXD71 m 35.0 1.4142   2   1.0 0.0404 34.0, 36.0 0.15
BXD73 f 16.1 7.6804   10 2.4288 0.477 7.0, 27.0 -1.72
BXD73 m 22.5 8.2765   10 2.6173 0.3678 14.0, 36.0 -1.48
BXD75 f 43.1 19.198   10 6.0708 0.4454 19.0, 82.0 1.13
BXD75 m 41.9 8.3593   10 2.6434 0.1995 29.0, 57.0 1.05
BXD77 f 61.25 9.6047   4 4.8023 0.1568 52.0, 73.0 3.06
BXD77 m 41.25 13.15   4 6.5749 0.3188 23.0, 54.0 0.97
BXD8 f 41.5 14.144   10 4.4728 0.3408 23.0, 63.0 0.97
BXD8 m 33.2 6.6131   10 2.0913 0.1992 21.0, 43.0 -0.08
BXD80 f 20.1 6.9674   10 2.2033 0.3466 15.0, 39.0 -1.3
BXD80 m 19.1 6.9354   10 2.1932 0.3631 10.0, 33.0 -1.92
BXD81 f 39.0 8.641   10 2.7325 0.2216 25.0, 50.0 0.7
BXD81 m 41.4 10.469   10 3.3106 0.2529 25.0, 63.0 0.98
BXD84 f 37.6 15.436   10 4.8813 0.4105 15.0, 61.0 0.55
BXD84 m 33.3 8.87   10 2.805 0.2664 17.0, 46.0 -0.07
BXD85 f 37.25 5.7373   4 2.8687 0.154 32.0, 44.0 0.52
BXD85 m 42.25 12.685   4 6.3426 0.3002 27.0, 58.0 1.1
BXD86 f 38.1 7.5196   10 2.3779 0.1974 28.0, 50.0 0.61
BXD86 m 39.5 10.179   10 3.2189 0.2577 22.0, 52.0 0.74
BXD87 f 16.9 10.29   10 3.2539 0.6089 6.0, 43.0 -1.64
BXD87 m 25.8 10.196   10 3.2242 0.3952 10.0, 44.0 -1.05
BXD89 f 35.1 9.024   10 2.8537 0.2571 24.0, 55.0 0.29
BXD89 m 39.4 13.599   10 4.3004 0.3452 25.0, 63.0 0.72
BXD90 f 27.833 4.9565   6 2.0235 0.1781 19.0, 32.0 -0.48
BXD90 m 28.333 8.3825   6 3.4222 0.2959 15.0, 38.0 -0.72
BXD92 f 38.5 2.1213   2   1.5 0.0551 37.0, 40.0 0.65
BXD92 m 43.333 9.2916   3 5.3645 0.2144 37.0, 54.0 1.24
BXD96 f 32.4 4.0879   10 1.2927 0.1262 23.0, 38.0 0.0
BXD96 m 39.1 10.365   10 3.2777 0.2651 26.0, 57.0 0.68
BXD97 f 36.5 12.886   10 4.075 0.353 19.0, 65.0 0.44
BXD97 m 32.3 11.046   10 3.493 0.342 11.0, 50.0 -0.2
BXD98 f 26.833 10.226   6 4.1747 0.3811 14.0, 44.0 -0.59
BXD98 m 37.429 8.4233   7 3.1837 0.2251 28.0, 50.0 0.47
C57BL/6J f 31.9 7.2026   10 2.2777 0.2258 23.0, 46.0 -0.05
C57BL/6J m 35.4 11.587   10 3.6642 0.3273 20.0, 56.0 0.2
DBA/2J f 13.1 8.9125   10 2.8184 0.6803 6.0, 37.0 -2.04
DBA/2J m 22.9 11.14   10 3.5228 0.4865 11.0, 42.0 -1.43


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BXD1 f 39.0 7.2899 53.3095 24.6905
BXD1 m 32.0 7.2899 46.3095 17.6905
BXD100 f 23.1 3.2601 29.4994 16.7006
BXD100 m 32.0 3.2601 38.3994 25.6006
BXD101 f 23.1667 4.2088 31.4283 14.9051
BXD101 m 31.375 3.645 38.5298 24.2202
BXD102 f 32.5 3.2601 38.8994 26.1006
BXD102 m 30.0 3.2601 36.3994 23.6006
BXD11 f 24.3 3.2601 30.6994 17.9006
BXD11 m 22.5 3.2601 28.8994 16.1006
BXD13 f 28.6 3.2601 34.9994 22.2006
BXD13 m 27.1 3.2601 33.4994 20.7006
BXD14 f 46.8 3.2601 53.1994 40.4006
BXD14 m 47.0 3.2601 53.3994 40.6006
BXD15 f 24.7 3.2601 31.0994 18.3006
BXD15 m 23.3 3.2601 29.6994 16.9006
BXD16 f 41.3 3.2601 47.6994 34.9006
BXD16 m 34.6 3.2601 40.9994 28.2006
BXD18 f 32.0 7.2899 46.3095 17.6905
BXD18 m 34.0 7.2899 48.3095 19.6905
BXD19 f 32.0 7.2899 46.3095 17.6905
BXD19 m 39.0 7.2899 53.3095 24.6905
BXD2 f 28.8 3.2601 35.1994 22.4006
BXD2 m 35.6 3.2601 41.9994 29.2006
BXD21 f 32.9 3.2601 39.2994 26.5006
BXD21 m 43.7 3.2601 50.0994 37.3006
BXD27 f 25.8 3.2601 32.1994 19.4006
BXD27 m 24.5 3.2601 30.8994 18.1006
BXD28 f 28.8 3.2601 35.1994 22.4006
BXD28 m 30.6 3.2601 36.9994 24.2006
BXD31 f 26.1 3.2601 32.4994 19.7006
BXD31 m 39.6 3.2601 45.9994 33.2006
BXD32 f 28.9 3.2601 35.2994 22.5006
BXD32 m 30.8 3.2601 37.1994 24.4006
BXD34 f 37.5 7.2899 51.8095 23.1905
BXD34 m 41.5 7.2899 55.8095 27.1905
BXD39 f 24.9 3.2601 31.2994 18.5006
BXD39 m 18.4 3.2601 24.7994 12.0006
BXD40 f 46.9 3.2601 53.2994 40.5006
BXD40 m 42.5 3.2601 48.8994 36.1006
BXD42 f 32.7 3.2601 39.0994 26.3006
BXD42 m 36.1 3.2601 42.4994 29.7006
BXD43 f 29.1 3.2601 35.4994 22.7006
BXD43 m 36.2 3.2601 42.5994 29.8006
BXD44 f 21.6 3.2601 27.9994 15.2006
BXD44 m 30.3 3.2601 36.6994 23.9006
BXD48 f 41.7 3.2601 48.0994 35.3006
BXD48 m 40.6 3.2601 46.9994 34.2006
BXD49 f 31.4 3.2601 37.7994 25.0006
BXD49 m 35.7 3.2601 42.0994 29.3006
BXD50 f 29.0 3.2601 35.3994 22.6006
BXD50 m 27.2 3.2601 33.5994 20.8006
BXD51 f 13.9 3.2601 20.2994 7.5006
BXD51 m 15.8 3.2601 22.1994 9.4006
BXD6 f 22.4 3.2601 28.7994 16.0006
BXD6 m 25.2 3.2601 31.5994 18.8006
BXD61 f 23.2 3.2601 29.5994 16.8006
BXD61 m 26.7 3.2601 33.0994 20.3006
BXD62 f 38.0 3.2601 44.3994 31.6006
BXD62 m 42.1 3.2601 48.4994 35.7006
BXD65 f 37.5 4.2088 45.7616 29.2384
BXD65 m 36.9 3.2601 43.2994 30.5006
BXD66 f 39.75 5.1547 49.8684 29.6316
BXD66 m 33.5 5.1547 43.6184 23.3816
BXD68 f 36.5 5.1547 46.6184 26.3816
BXD68 m 29.3333 4.2088 37.5949 21.0717
BXD69 f 40.7 3.2601 47.0994 34.3006
BXD69 m 41.6 3.2601 47.9994 35.2006
BXD70 f 38.3 3.2601 44.6994 31.9006
BXD70 m 41.1 3.2601 47.4994 34.7006
BXD73 f 16.1 3.2601 22.4994 9.7006
BXD73 m 22.5 3.2601 28.8994 16.1006
BXD75 f 43.1 3.2601 49.4994 36.7006
BXD75 m 41.9 3.2601 48.2994 35.5006
BXD77 f 61.25 5.1547 71.3684 51.1316
BXD77 m 41.25 5.1547 51.3684 31.1316
BXD8 f 41.5 3.2601 47.8994 35.1006
BXD8 m 33.2 3.2601 39.5994 26.8006
BXD80 f 20.1 3.2601 26.4994 13.7006
BXD80 m 19.1 3.2601 25.4994 12.7006
BXD81 f 39.0 3.2601 45.3994 32.6006
BXD81 m 41.4 3.2601 47.7994 35.0006
BXD84 f 37.6 3.2601 43.9994 31.2006
BXD84 m 33.3 3.2601 39.6994 26.9006
BXD85 f 37.25 5.1547 47.3684 27.1316
BXD85 m 42.25 5.1547 52.3684 32.1316
BXD86 f 38.1 3.2601 44.4994 31.7006
BXD86 m 39.5 3.2601 45.8994 33.1006
BXD87 f 16.9 3.2601 23.2994 10.5006
BXD87 m 25.8 3.2601 32.1994 19.4006
BXD89 f 35.1 3.2601 41.4994 28.7006
BXD89 m 39.4 3.2601 45.7994 33.0006
BXD90 f 27.8333 4.2088 36.0949 19.5717
BXD90 m 28.3333 4.2088 36.5949 20.0717
BXD92 f 38.5 7.2899 52.8095 24.1905
BXD92 m 43.3333 5.9522 55.017 31.6497
BXD96 f 32.4 3.2601 38.7994 26.0006
BXD96 m 39.1 3.2601 45.4994 32.7006
BXD97 f 36.5 3.2601 42.8994 30.1006
BXD97 m 32.3 3.2601 38.6994 25.9006
BXD98 f 26.8333 4.2088 35.0949 18.5717
BXD98 m 37.4286 3.8966 45.0773 29.7798
C57BL/6J f 31.9 3.2601 38.2994 25.5006
C57BL/6J m 35.4 3.2601 41.7994 29.0006
DBA/2J f 13.1 3.2601 19.4994 6.7006
DBA/2J m 22.9 3.2601 29.2994 16.5006


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BXD1 both 35.5 5.1547 45.6184 25.3816
BXD100 both 27.55 2.3053 32.0751 23.0249
BXD101 both 27.2708 2.7839 32.7354 21.8063
BXD102 both 31.25 2.3053 35.7751 26.7249
BXD11 both 23.4 2.3053 27.9251 18.8749
BXD13 both 27.85 2.3053 32.3751 23.3249
BXD14 both 46.9 2.3053 51.4251 42.3749
BXD15 both 24.0 2.3053 28.5251 19.4749
BXD16 both 37.95 2.3053 42.4751 33.4249
BXD18 both 33.0 5.1547 43.1184 22.8816
BXD19 both 35.5 5.1547 45.6184 25.3816
BXD2 both 32.2 2.3053 36.7251 27.6749
BXD21 both 38.3 2.3053 42.8251 33.7749
BXD27 both 25.15 2.3053 29.6751 20.6249
BXD28 both 29.7 2.3053 34.2251 25.1749
BXD31 both 32.85 2.3053 37.3751 28.3249
BXD32 both 29.85 2.3053 34.3751 25.3249
BXD34 both 39.5 5.1547 49.6184 29.3816
BXD39 both 21.65 2.3053 26.1751 17.1249
BXD40 both 44.7 2.3053 49.2251 40.1749
BXD42 both 34.4 2.3053 38.9251 29.8749
BXD43 both 32.65 2.3053 37.1751 28.1249
BXD44 both 25.95 2.3053 30.4751 21.4249
BXD48 both 41.15 2.3053 45.6751 36.6249
BXD49 both 33.55 2.3053 38.0751 29.0249
BXD50 both 28.1 2.3053 32.6251 23.5749
BXD51 both 14.85 2.3053 19.3751 10.3249
BXD6 both 23.8 2.3053 28.3251 19.2749
BXD61 both 24.95 2.3053 29.4751 20.4249
BXD62 both 40.05 2.3053 44.5751 35.5249
BXD65 both 37.2 2.6619 42.4251 31.9749
BXD66 both 36.625 3.645 43.7798 29.4702
BXD68 both 32.9167 3.3274 39.448 26.3853
BXD69 both 41.15 2.3053 45.6751 36.6249
BXD70 both 39.7 2.3053 44.2251 35.1749
BXD73 both 19.3 2.3053 23.8251 14.7749
BXD75 both 42.5 2.3053 47.0251 37.9749
BXD77 both 51.25 3.645 58.4048 44.0952
BXD8 both 37.35 2.3053 41.8751 32.8249
BXD80 both 19.6 2.3053 24.1251 15.0749
BXD81 both 40.2 2.3053 44.7251 35.6749
BXD84 both 35.45 2.3053 39.9751 30.9249
BXD85 both 39.75 3.645 46.9048 32.5952
BXD86 both 38.8 2.3053 43.3251 34.2749
BXD87 both 21.35 2.3053 25.8751 16.8249
BXD89 both 37.25 2.3053 41.7751 32.7249
BXD90 both 28.0833 2.9761 33.9252 22.2415
BXD92 both 40.9167 4.7056 50.1534 31.6799
BXD96 both 35.75 2.3053 40.2751 31.2249
BXD97 both 34.4 2.3053 38.9251 29.8749
BXD98 both 32.131 2.8678 37.7603 26.5016
C57BL/6J both 33.65 2.3053 38.1751 29.1249
DBA/2J both 18.0 2.3053 22.5251 13.4749




  GWAS USING LINEAR MIXED MODELS